Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 8.2e-163 577.0 296 100.0
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 7.3e-95 351.3 333 61.0
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 1.7e-88 330.1 317 58.4
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.6e-86 323.6 321 57.0
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.0e-85 318.9 321 56.1
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 4.0e-85 318.9 332 54.2
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.8e-84 315.1 320 55.9
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 3.5e-81 305.8 323 53.6
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 2.5e-79 299.7 316 53.8
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 3.3e-79 299.3 333 51.7
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.7e-75 287.0 320 52.8
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 8.4e-75 284.6 306 51.0
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 1.4e-74 283.9 316 50.3
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 3.2e-74 282.7 331 50.8
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.1e-73 280.0 316 52.8
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 2.1e-70 270.0 321 50.2
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.8e-70 269.6 297 51.9
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 1.4e-69 267.3 309 49.2
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 6.9e-69 265.0 303 51.5
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 7.6e-68 261.5 295 50.5
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 4.9e-67 258.8 311 51.1
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 1.9e-66 256.9 300 50.7
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 9.6e-63 244.6 313 46.0
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.9e-59 233.0 320 46.6
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 1.6e-57 227.3 318 43.1
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.0e-56 224.6 311 42.8
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 1.0e-56 224.6 309 43.7
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.8e-56 223.8 310 44.5
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 3.7e-54 216.1 313 44.1
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 8.2e-54 214.9 304 42.4
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 8.2e-54 214.9 319 42.0
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.4e-53 213.4 320 41.9
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 9.1e-53 211.5 310 43.2
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 1.2e-52 211.1 309 42.1
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 2.0e-52 210.3 313 44.1
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 5.0e-51 205.7 292 43.2
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 1.2e-49 201.1 315 38.4
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 7.9e-49 198.4 305 40.7
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 5.1e-48 195.7 314 41.4
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.5e-47 194.1 308 40.3
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.5e-47 194.1 307 40.4
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 2.0e-47 193.7 329 38.0
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 3.3e-47 193.0 322 38.5
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 4.4e-47 192.6 315 37.5
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.4e-47 191.8 308 40.3
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 1.3e-46 191.0 306 40.5
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 4.8e-46 189.1 306 38.2
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 8.2e-46 188.3 235 48.5
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 4.1e-45 186.0 322 37.6
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 5.3e-45 185.7 311 39.2
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 6.9e-45 185.3 323 39.3
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 1.3e-43 181.0 331 36.9
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 1.2e-41 174.5 315 36.8
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 1.6e-41 174.1 327 35.5
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 1.0e-40 171.4 296 40.2
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 1.0e-40 171.4 333 34.8
FAN11G1076 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.8e-40 170.6 245 46.5
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 5.2e-40 169.1 271 38.4
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 6.7e-40 168.7 197 49.2
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 2.0e-39 167.2 320 35.6
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.3e-39 166.4 208 47.6
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 1.3e-38 164.5 315 35.2
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 1.4e-37 161.0 302 36.4
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 1.3e-35 154.5 302 34.8
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.2e-35 153.7 307 34.9
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.9e-35 153.3 317 35.6
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 5.0e-35 152.5 302 35.1
Medtr8g090020 Medicago truncatula HOM05D003615 ORTHO05D004858 6.5e-35 152.1 252 40.9
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 6.5e-35 152.1 308 35.1
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 8.5e-35 151.8 274 37.6
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 8.5e-35 151.8 309 34.3
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.5e-34 151.0 308 34.7
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.9e-34 150.6 310 34.8
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 3.2e-34 149.8 306 35.6
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 3.2e-34 149.8 322 32.6
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 9.4e-34 148.3 190 46.8
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.6e-33 146.4 306 34.3
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.6e-33 146.4 302 34.4
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 4.0e-32 142.9 207 40.6
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.0e-31 140.6 289 34.6
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 2.6e-31 140.2 325 33.5
Glyma.05G176900 Glycine max HOM05D003615 ORTHO05D004858 7.5e-31 138.7 222 38.3
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 1.7e-30 137.5 303 32.0
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 2.2e-30 137.1 303 31.4
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.2e-30 137.1 320 33.1
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 6.3e-30 135.6 317 33.1
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 8.2e-30 135.2 303 31.7
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.2e-28 131.3 304 32.9
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.0e-28 130.6 320 32.2
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 3.5e-28 129.8 327 32.1
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.0e-27 128.3 343 29.4
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 1.7e-27 127.5 316 31.0
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 1.9e-26 124.0 325 32.0
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.9e-26 124.0 317 32.2
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 3.2e-26 123.2 324 33.0
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 4.2e-26 122.9 344 28.5
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 5.5e-26 122.5 343 28.9
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 1.2e-25 121.3 327 32.7
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 1.6e-25 120.9 352 28.7
Thecc.02G244700 Theobroma cacao HOM05D003615 ORTHO05D004858 2.1e-25 120.6 267 32.2
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 3.6e-25 119.8 233 37.3
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 1.4e-24 117.9 337 27.9
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 2.3e-24 117.1 320 32.2
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 1.2e-23 114.8 337 29.7
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.0e-23 114.0 325 32.6
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.3e-22 111.3 325 30.5
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.3e-22 111.3 311 31.5
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.2e-22 110.5 306 30.7
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 8.3e-22 108.6 324 30.9
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 1.1e-21 108.2 201 36.8
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 1.4e-21 107.8 322 31.1
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 1.8e-21 107.5 338 29.3
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 5.4e-21 105.9 333 30.3
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 2.0e-20 104.0 286 30.1
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 2.0e-20 104.0 324 30.9
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 1.0e-19 101.7 356 27.5
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 3.8e-19 99.8 354 28.0
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 5.0e-19 99.4 308 28.9
FAN17G0045 Fragaria x ananassa HOM05D003615 ORTHO05D004858 8.6e-19 98.6 119 47.1
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 1.1e-18 98.2 356 27.2
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 1.1e-18 98.2 361 27.4
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 3.2e-18 96.7 356 27.5
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 4.2e-18 96.3 310 28.1
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 5.5e-18 95.9 337 27.9
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 7.2e-18 95.5 344 29.7
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 1.6e-17 94.4 331 27.5
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 4.7e-17 92.8 352 27.6
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 6.1e-17 92.4 355 27.6
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 8.0e-17 92.0 352 27.0
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.0e-16 91.7 335 28.1
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 5.2e-16 89.4 114 43.0
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 6.8e-16 89.0 312 28.5
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 1.5e-15 87.8 300 27.0
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 2.0e-15 87.4 275 32.7
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 5.7e-15 85.9 251 28.7
Duzib187G1117 Durio zibethinus HOM05D003615 ORTHO05D004858 1.3e-14 84.7 150 37.3
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.7e-14 84.3 324 26.2
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.7e-14 84.3 351 26.2
Nn3g16919 Nelumbo nucifera HOM05D003615 ORTHO05D004858 3.7e-14 83.2 157 36.3
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 2.4e-13 80.5 336 26.5
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 2.4e-13 80.5 104 41.3
Thecc.02G244800 Theobroma cacao HOM05D003615 ORTHO05D004858 1.2e-12 78.2 152 36.2
BraA09t39587Z Brassica rapa HOM05D003615 ORTHO05D004858 1.6e-12 77.8 173 30.6
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 2.7e-12 77.0 187 30.5
BcaC05g26283 Brassica carinata HOM05D003615 ORTHO05D004858 7.8e-12 75.5 173 30.6
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 1.7e-11 74.3 186 33.3
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 2.9e-11 73.6 90 44.4
Sc18g0001840 Simmondsia chinensis HOM05D003615 ORTHO05D004858 2.9e-11 73.6 228 28.1
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 8.6e-11 72.0 280 27.1
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 1.5e-10 71.2 97 45.4
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 3.3e-10 70.1 199 31.7
MD16G1090400 Malus domestica HOM05D003615 ORTHO05D015110 3.6e-09 66.6 327 26.6
FvH4_4g34761 Fragaria vesca HOM05D003615 ORTHO05D015110 2.3e-08 63.9 315 26.7
FAN12G3114 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.3e-08 63.9 315 26.7
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 4.0e-08 63.2 204 28.4
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 5.2e-08 62.8 242 27.7
FvH4_4g34760 Fragaria vesca HOM05D003615 ORTHO05D015110 2.0e-07 60.8 303 25.1
FAN07G1344 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.0e-07 60.8 304 25.3
FAN12G4087 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.6e-07 60.5 303 25.1
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 4.4e-07 59.7 183 30.1
FAN11G0954 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.3e-06 58.2 65 47.7
FAN17G2861 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.2e-06 57.4 295 25.8
FAN22G2348 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.2e-06 57.4 106 33.0
MD16G1090300 Malus domestica HOM05D003615 ORTHO05D015110 2.9e-06 57.0 315 23.5
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 3.7e-06 56.6 115 33.9
Rhsim10G0024000 Rhododendron simsii HOM05D003615 ORTHO05D004858 3.7e-06 56.6 140 31.4
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 6.4e-06 55.8 100 33.0
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 8.3e-06 55.5 196 28.6


User provided reference genes

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