Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 2.0e-47 192.2 105 100.0
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 6.3e-41 170.6 103 92.2
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 5.0e-38 161.0 105 84.8
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 7.2e-37 157.1 105 81.9
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 8.8e-35 150.2 105 80.0
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 2.0e-34 149.1 105 79.0
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.7e-34 147.5 105 79.0
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.2e-33 145.6 105 78.1
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 3.7e-33 144.8 106 78.3
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.6e-31 139.4 105 76.2
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 2.0e-26 122.5 106 67.9
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.8e-25 118.6 89 78.7
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 6.3e-25 117.5 105 65.7
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 6.3e-25 117.5 107 64.5
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 4.1e-24 114.8 106 68.9
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 5.3e-24 114.4 105 65.7
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 2.0e-23 112.5 99 66.7
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 2.7e-23 112.1 105 63.8
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.7e-23 112.1 105 63.8
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 5.9e-23 110.9 106 66.0
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 5.9e-23 110.9 105 62.9
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 7.7e-23 110.5 106 65.1
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 1.7e-22 109.4 113 61.9
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.2e-22 109.0 105 61.9
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 3.8e-22 108.2 108 63.9
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 8.5e-22 107.1 109 60.6
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.9e-21 105.9 106 61.3
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 2.5e-21 105.5 101 60.4
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 2.1e-20 102.4 108 60.2
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 1.4e-19 99.8 106 58.5
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 5.2e-19 97.8 106 56.6
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 6.8e-19 97.4 108 59.3
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 1.2e-18 96.7 106 56.6
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 2.6e-18 95.5 105 57.1
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 4.4e-18 94.7 106 56.6
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 1.3e-17 93.2 114 53.5
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 4.8e-17 91.3 106 55.7
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 8.3e-17 90.5 106 54.7
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 8.3e-17 90.5 111 58.6
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.4e-16 89.0 107 57.0
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 3.1e-16 88.6 110 53.6
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 4.1e-16 88.2 107 57.9
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 4.1e-16 88.2 103 56.3
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 9.1e-16 87.0 105 53.3
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.6e-15 86.3 113 53.1
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 2.7e-15 85.5 106 52.8
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 2.7e-15 85.5 105 58.1
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 2.7e-15 85.5 104 52.9
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 3.5e-15 85.1 106 53.8
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 3.5e-15 85.1 111 56.8
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 4.5e-15 84.7 108 52.8
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 1.3e-14 83.2 106 52.8
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 1.3e-14 83.2 102 52.0
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 2.2e-14 82.4 109 51.4
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 2.9e-14 82.0 104 56.7
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 2.9e-14 82.0 109 53.2
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 3.8e-14 81.6 101 53.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 2.5e-13 79.0 99 51.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 5.5e-13 77.8 110 50.9
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 5.5e-13 77.8 105 51.4
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 7.2e-13 77.4 99 51.5
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 2.1e-12 75.9 111 50.5
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 2.7e-12 75.5 104 48.1
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 2.7e-12 75.5 104 48.1
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 4.7e-12 74.7 106 50.9
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 6.1e-12 74.3 106 50.9
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 8.0e-12 73.9 104 50.0
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 8.0e-12 73.9 107 52.3
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 1.8e-11 72.8 110 49.1
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 2.3e-11 72.4 111 51.4
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.3e-11 72.4 105 47.6
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 4.0e-11 71.6 104 48.1
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 8.8e-11 70.5 101 51.5
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 1.5e-10 69.7 107 49.5
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 2.0e-10 69.3 49 75.5
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.0e-10 69.3 105 50.5
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 2.6e-10 68.9 100 45.0
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 3.4e-10 68.6 105 47.6
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 5.7e-10 67.8 110 49.1
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 9.8e-10 67.0 104 51.0
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 9.8e-10 67.0 107 46.7
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.3e-09 66.6 49 73.5
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 2.8e-09 65.5 103 48.5
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 2.8e-09 65.5 106 48.1
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 3.7e-09 65.1 102 48.0
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 3.7e-09 65.1 102 48.0
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.7e-09 65.1 105 44.8
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 3.7e-09 65.1 47 70.2
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 4.9e-09 64.7 105 48.6
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 8.3e-09 63.9 100 46.0
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 1.1e-08 63.5 48 68.8
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.4e-08 63.2 105 44.8
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 3.1e-08 62.0 112 43.8
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.2e-07 60.1 103 41.7
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 2.0e-07 59.3 68 45.6
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 2.7e-07 58.9 97 46.4
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 3.5e-07 58.5 66 45.5
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 5.9e-07 57.8 96 46.9
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.3e-06 56.6 103 38.8
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 1.3e-06 56.6 107 46.7
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 2.3e-06 55.8 83 41.0
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 5.0e-06 54.7 64 45.3
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 6.6e-06 54.3 75 44.0
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 8.6e-06 53.9 45 55.6
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 8.6e-06 53.9 72 41.7


User provided reference genes

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