Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 1.8e-37 158.7 78 100.0
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 3.0e-24 114.8 84 75.0
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 4.9e-22 107.5 82 72.0
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 5.5e-18 94.0 68 69.1
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 3.6e-17 91.3 68 66.2
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 4.7e-17 90.9 68 66.2
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 6.1e-17 90.5 77 62.3
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.0e-16 89.7 76 61.8
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 1.8e-16 89.0 77 61.0
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.0e-16 88.2 72 59.7
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 5.2e-16 87.4 78 61.5
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 6.8e-16 87.0 71 67.6
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 8.9e-16 86.7 81 59.3
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 2.0e-15 85.5 85 56.5
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 2.0e-15 85.5 63 66.7
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 2.0e-15 85.5 88 55.7
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 2.6e-15 85.1 69 65.2
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 4.4e-15 84.3 79 57.0
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 7.5e-15 83.6 64 68.8
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 9.8e-15 83.2 79 58.2
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 1.3e-14 82.8 89 56.2
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 1.7e-14 82.4 69 62.3
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.7e-14 82.4 85 56.5
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.7e-14 82.4 85 56.5
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 1.7e-14 82.4 78 55.1
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 2.9e-14 81.6 41 90.2
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 2.9e-14 81.6 76 59.2
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 3.7e-14 81.3 41 87.8
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 4.9e-14 80.9 85 55.3
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 4.9e-14 80.9 62 64.5
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 6.3e-14 80.5 67 64.2
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 6.3e-14 80.5 77 58.4
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 8.3e-14 80.1 75 57.3
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 8.3e-14 80.1 62 62.9
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 1.4e-13 79.3 76 63.2
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 1.4e-13 79.3 72 61.1
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 1.8e-13 79.0 56 64.3
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.8e-13 79.0 60 61.7
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 1.8e-13 79.0 66 60.6
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 1.8e-13 79.0 69 63.8
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 2.4e-13 78.6 72 56.9
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 2.4e-13 78.6 72 56.9
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 2.4e-13 78.6 72 56.9
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 2.4e-13 78.6 56 64.3
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 2.4e-13 78.6 72 56.9
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 2.4e-13 78.6 72 56.9
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 2.4e-13 78.6 72 56.9
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 2.4e-13 78.6 56 64.3
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 2.4e-13 78.6 40 87.5
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 2.4e-13 78.6 62 62.9
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 2.4e-13 78.6 87 50.6
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 3.2e-13 78.2 75 56.0
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 4.1e-13 77.8 76 59.2
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 4.1e-13 77.8 69 60.9
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 5.4e-13 77.4 69 56.5
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 7.0e-13 77.0 84 56.0
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 7.0e-13 77.0 78 52.6
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 7.0e-13 77.0 41 82.9
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 9.2e-13 76.6 53 67.9
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 9.2e-13 76.6 44 75.0
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 9.2e-13 76.6 79 51.9
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 9.2e-13 76.6 74 58.1
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 1.2e-12 76.3 69 59.4
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 1.6e-12 75.9 56 62.5
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 1.6e-12 75.9 56 62.5
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 1.6e-12 75.9 73 57.5
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 2.0e-12 75.5 72 58.3
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 2.0e-12 75.5 57 61.4
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 2.7e-12 75.1 80 56.2
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 2.7e-12 75.1 66 63.6
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 2.7e-12 75.1 75 53.3
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 4.6e-12 74.3 41 78.0
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 5.9e-12 73.9 40 82.5
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.3e-11 72.8 72 56.9
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 1.3e-11 72.8 73 54.8
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 1.7e-11 72.4 70 57.1
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 1.7e-11 72.4 64 56.2
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 2.3e-11 72.0 42 78.6
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 2.3e-11 72.0 41 82.9
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.9e-11 71.6 40 80.0
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 2.9e-11 71.6 62 59.7
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 6.6e-11 70.5 60 58.3
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 6.6e-11 70.5 75 57.3
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.1e-10 69.7 53 62.3
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 1.1e-10 69.7 41 82.9
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 1.1e-10 69.7 41 82.9
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.5e-10 69.3 72 55.6
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.9e-10 68.9 67 55.2
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 2.5e-10 68.6 75 56.0
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 2.5e-10 68.6 45 77.8
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 5.6e-10 67.4 68 51.5
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 5.6e-10 67.4 75 54.7
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 7.3e-10 67.0 42 81.0
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 7.3e-10 67.0 74 48.6
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 7.3e-10 67.0 74 48.6
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.2e-09 66.2 74 48.6
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 1.2e-09 66.2 56 66.1
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.6e-09 64.7 70 47.1
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.6e-09 64.7 70 47.1
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 1.0e-08 63.2 81 45.7
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.8e-08 62.4 38 76.3
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.8e-08 62.4 74 50.0
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 4.0e-08 61.2 74 45.9
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.5e-07 59.3 74 43.2
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 2.6e-07 58.5 42 66.7
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 2.6e-07 58.5 72 47.2
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 9.8e-07 56.6 66 45.5
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.7e-06 55.8 34 70.6
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 2.2e-06 55.5 62 56.5
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 2.2e-06 55.5 46 65.2
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 2.9e-06 55.1 46 65.2
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 3.7e-06 54.7 42 57.1
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 3.7e-06 54.7 37 70.3
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 4.9e-06 54.3 45 55.6
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 4.9e-06 54.3 33 69.7
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 8.3e-06 53.5 32 71.9
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 8.3e-06 53.5 36 66.7
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 8.3e-06 53.5 36 66.7
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 8.3e-06 53.5 37 59.5


User provided reference genes

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