Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 1.1e-119 433.3 213 100.0
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 1.4e-79 300.1 216 73.6
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 2.2e-61 239.6 216 60.6
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.7e-59 232.6 221 60.2
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 8.8e-58 227.6 221 58.8
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 8.8e-58 227.6 221 58.8
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.4e-57 224.6 215 58.1
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 2.8e-56 222.6 219 57.5
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 4.5e-54 215.3 223 53.8
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 1.0e-53 214.2 219 55.7
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 2.9e-53 212.6 208 57.2
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 6.5e-53 211.5 226 54.4
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 8.5e-53 211.1 187 57.2
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 1.1e-52 210.7 221 53.8
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.6e-51 206.8 214 52.8
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 3.6e-51 205.7 213 52.6
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.4e-50 203.8 218 50.9
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 2.3e-50 203.0 226 54.4
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 4.0e-50 202.2 201 55.2
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 6.7e-50 201.4 219 53.4
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 2.6e-49 199.5 185 58.9
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 4.4e-49 198.7 203 54.2
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 7.5e-49 198.0 169 63.3
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 9.7e-49 197.6 167 58.1
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 5.3e-47 191.8 225 48.4
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 4.5e-46 188.7 203 49.8
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 1.0e-45 187.6 174 54.6
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.1e-44 184.1 200 49.0
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 2.5e-44 183.0 239 47.3
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 4.2e-44 182.2 212 50.0
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 8.8e-42 174.5 212 47.2
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 1.2e-41 174.1 175 52.0
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 5.7e-41 171.8 191 46.6
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 7.5e-41 171.4 175 57.7
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 3.7e-40 169.1 219 44.7
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 4.1e-39 165.6 176 47.7
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 1.3e-37 160.6 253 40.7
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 5.0e-37 158.7 255 36.9
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 1.1e-36 157.5 288 37.5
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 4.2e-36 155.6 169 51.5
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.6e-35 153.7 113 67.3
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 1.0e-34 151.0 224 42.4
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 1.8e-34 150.2 240 39.2
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 4.0e-34 149.1 197 43.1
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 6.8e-34 148.3 189 43.9
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 6.8e-34 148.3 203 42.9
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 3.4e-33 146.0 240 37.9
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 2.8e-32 142.9 196 43.4
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 4.9e-32 142.1 167 45.5
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 8.3e-32 141.4 295 34.9
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.1e-31 141.0 267 36.3
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 5.4e-31 138.7 165 43.6
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.7e-30 136.3 184 39.7
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 3.5e-30 136.0 292 34.9
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 1.0e-29 134.4 167 43.1
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 2.3e-29 133.3 174 40.2
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 3.0e-26 122.9 106 56.6
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 8.9e-26 121.3 196 40.8
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 1.6e-22 110.5 197 35.5
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 5.9e-22 108.6 205 35.6
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 6.6e-21 105.1 165 39.4
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 1.9e-20 103.6 186 38.2
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 5.6e-20 102.1 124 42.7
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 7.3e-20 101.7 125 38.4
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 8.0e-19 98.2 207 29.5
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 1.4e-18 97.4 203 33.0
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.2e-17 94.4 198 31.3
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 2.6e-17 93.2 128 43.8
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 5.8e-17 92.0 97 40.2
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 4.9e-16 89.0 185 31.4
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 8.3e-16 88.2 176 32.4
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 8.3e-16 88.2 176 32.4
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 3.2e-15 86.3 171 32.7
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 5.4e-15 85.5 77 49.4
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 1.2e-14 84.3 160 33.1
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.6e-14 84.0 185 27.6
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 2.0e-14 83.6 189 30.2
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 2.0e-14 83.6 150 35.3
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 6.0e-14 82.0 76 48.7
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.8e-14 81.6 79 43.0
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.8e-14 81.6 79 43.0
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 1.0e-13 81.3 74 45.9
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 1.7e-13 80.5 122 37.7
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 1.7e-13 80.5 79 41.8
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.7e-13 80.5 74 43.2
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 1.7e-13 80.5 74 41.9
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 2.3e-13 80.1 113 34.5
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.3e-13 80.1 79 41.8
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 3.0e-13 79.7 92 39.1
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 3.0e-13 79.7 74 43.2
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 3.9e-13 79.3 243 27.2
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 5.0e-13 79.0 102 35.3
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.0e-13 79.0 79 41.8
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 5.0e-13 79.0 120 39.2
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 5.0e-13 79.0 74 45.9
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 6.6e-13 78.6 74 41.9
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 8.6e-13 78.2 106 36.8
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 8.6e-13 78.2 76 39.5
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 1.5e-12 77.4 79 40.5
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 1.9e-12 77.0 110 32.7
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.5e-12 76.6 74 43.2
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 2.5e-12 76.6 74 44.6
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.5e-12 76.6 71 43.7
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 2.5e-12 76.6 92 37.0
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 3.3e-12 76.3 119 39.5
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 3.3e-12 76.3 163 31.9
TPR.G38725 Trifolium pratense HOM05D002002 ORTHO05D003658 9.5e-12 74.7 87 44.8
Medtr5g033070 Medicago truncatula HOM05D002002 ORTHO05D003658 1.2e-11 74.3 125 37.6
Ca_04572_v3 Cicer arietinum L. HOM05D002002 ORTHO05D003658 2.1e-11 73.6 67 53.7
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 2.1e-11 73.6 84 39.3
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.1e-11 73.6 107 37.4
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.1e-11 73.6 127 34.6
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 2.1e-11 73.6 114 34.2
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 3.6e-11 72.8 74 41.9
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 8.1e-11 71.6 127 34.6
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 1.1e-10 71.2 106 37.7
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 1.1e-10 71.2 127 33.1
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.4e-10 70.9 73 43.8
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 1.8e-10 70.5 74 41.9
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 2.3e-10 70.1 98 36.7
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 3.1e-10 69.7 173 27.7
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 3.1e-10 69.7 74 40.5
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.1e-10 69.7 93 35.5
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 4.0e-10 69.3 81 35.8
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 4.0e-10 69.3 92 33.7
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 4.0e-10 69.3 100 37.0
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 4.0e-10 69.3 160 27.5
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 5.2e-10 68.9 101 36.6
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 5.2e-10 68.9 71 42.3
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 6.8e-10 68.6 74 40.5
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 1.2e-09 67.8 104 33.7
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 1.5e-09 67.4 122 32.0
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 2.0e-09 67.0 91 36.3
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.0e-09 67.0 91 36.3
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 2.0e-09 67.0 104 33.7
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 2.0e-09 67.0 143 28.7
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 2.0e-09 67.0 112 33.0
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 3.4e-09 66.2 74 39.2
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 3.4e-09 66.2 96 34.4
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 3.4e-09 66.2 126 33.3
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 4.4e-09 65.9 69 36.2
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 5.8e-09 65.5 74 40.5
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 5.8e-09 65.5 74 41.9
Glyma.08G282202 Glycine max HOM05D002002 ORTHO05D003658 7.5e-09 65.1 68 52.9
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 7.5e-09 65.1 74 44.6
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 7.5e-09 65.1 73 39.7
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 9.8e-09 64.7 196 29.1
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 9.8e-09 64.7 74 39.2
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 9.8e-09 64.7 99 34.3
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.3e-08 64.3 88 36.4
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.3e-08 64.3 88 36.4
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.3e-08 64.3 88 36.4
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.3e-08 64.3 137 28.5
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 1.3e-08 64.3 93 34.4
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.3e-08 64.3 76 39.5
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.3e-08 64.3 56 48.2
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 1.3e-08 64.3 74 40.5
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 1.7e-08 63.9 111 32.4
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.2e-08 63.5 96 34.4
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 2.9e-08 63.2 90 35.6
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 6.4e-08 62.0 60 43.3
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 8.3e-08 61.6 87 34.5
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 8.3e-08 61.6 97 34.0
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 1.4e-07 60.8 80 36.2
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 1.4e-07 60.8 65 41.5
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 1.9e-07 60.5 68 39.7
Glyma.03G253700 Glycine max HOM05D007028 ORTHO05D003658 1.9e-07 60.5 71 43.7
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 1.9e-07 60.5 200 28.0
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 1.9e-07 60.5 68 39.7
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 2.4e-07 60.1 65 41.5
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.4e-07 60.1 65 41.5
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 4.1e-07 59.3 74 36.5
Lsat_1_v5_gn_9_12301 Lactuca sativa HOM05D007028 ORTHO05D003658 5.4e-07 58.9 83 34.9
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 7.1e-07 58.5 93 33.3
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 7.1e-07 58.5 92 30.4
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 9.2e-07 58.2 72 36.1
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 9.2e-07 58.2 72 36.1
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.2e-06 57.8 91 30.8
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 1.6e-06 57.4 81 34.6
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 2.1e-06 57.0 72 33.3
DCAR_005532 Daucus carota HOM05D007028 ORTHO05D003658 2.7e-06 56.6 90 31.1
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 3.5e-06 56.2 82 31.7
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 3.5e-06 56.2 68 36.8
Cpa.g.sc8.155 Carica papaya HOM05D007028 ORTHO05D003658 6.0e-06 55.5 77 31.2
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 6.0e-06 55.5 87 31.0
Dinv19203 Davidia involucrata HOM05D007028 ORTHO05D003658 6.0e-06 55.5 79 36.7


User provided reference genes

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