Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 0.0e+00 1100.1 699 100.0
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 4.1e-213 745.3 715 64.8
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 4.3e-210 735.3 709 67.4
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 3.1e-168 596.3 708 62.0
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 2.2e-166 590.1 668 60.5
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 4.2e-157 559.3 673 60.0
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 1.5e-154 550.8 689 56.3
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 3.3e-154 549.7 668 61.2
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 1.5e-146 524.2 723 53.5
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 1.9e-141 507.3 714 52.8
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 1.2e-132 478.0 587 53.5
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 4.5e-127 459.5 727 48.6
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 8.5e-126 455.3 725 48.1
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 3.2e-125 453.4 697 48.9
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 1.1e-120 438.3 736 47.3
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 1.1e-120 438.3 673 46.5
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 4.5e-119 433.0 734 51.0
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 7.7e-119 432.2 575 50.8
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 6.5e-118 429.1 702 49.0
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 8.0e-116 422.2 516 53.3
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 3.7e-113 413.3 716 45.3
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 1.2e-111 408.3 683 45.5
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 1.0e-110 405.2 712 43.4
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 3.8e-110 403.3 678 50.1
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 4.2e-109 399.8 668 47.5
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 1.6e-108 397.9 734 49.6
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 2.7e-108 397.1 735 47.6
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 6.3e-105 386.0 646 45.0
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 4.5e-103 379.8 698 44.1
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 1.3e-102 378.3 608 45.9
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 5.0e-102 376.3 728 46.0
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 5.0e-102 376.3 728 46.0
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 1.1e-101 375.2 683 45.2
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 1.1e-101 375.2 725 42.6
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 5.5e-101 372.9 699 46.1
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 4.7e-100 369.8 657 45.2
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 2.6e-98 364.0 601 46.1
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 4.4e-98 363.2 713 44.3
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 1.1e-96 358.6 671 41.6
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 9.2e-96 355.5 694 41.8
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 1.7e-94 351.3 682 41.9
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 3.9e-94 350.1 658 41.8
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 1.8e-91 341.3 657 42.2
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 1.1e-88 332.0 738 43.9
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 1.4e-88 331.6 703 40.7
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 2.0e-87 327.8 697 40.7
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 3.5e-87 327.0 683 46.0
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.7e-86 324.7 715 44.2
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 5.0e-86 323.2 373 53.9
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 6.6e-86 322.8 739 46.0
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 4.3e-85 320.1 636 43.9
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 2.3e-83 314.3 666 40.8
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 1.5e-82 311.6 748 37.8
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 7.5e-82 309.3 688 39.4
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 9.8e-82 308.9 687 40.0
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 9.2e-80 302.4 744 37.8
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 1.6e-79 301.6 679 41.5
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 7.3e-77 292.7 721 43.6
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 1.7e-73 281.6 699 40.6
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 3.7e-73 280.4 656 39.2
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 6.4e-73 279.6 717 39.6
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 7.1e-72 276.2 583 43.1
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 7.8e-71 272.7 679 39.2
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 5.1e-70 270.0 600 41.5
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 2.5e-69 267.7 710 39.2
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 7.3e-69 266.2 721 38.8
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 5.2e-67 260.0 698 40.0
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 1.5e-66 258.5 678 40.0
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 2.6e-66 257.7 686 39.8
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 3.5e-63 247.3 648 37.7
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 6.0e-63 246.5 708 39.8
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 9.6e-61 239.2 690 40.3
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 2.8e-60 237.7 732 40.6
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 2.4e-59 234.6 578 38.4
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 6.9e-59 233.0 546 37.5
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 3.5e-55 220.7 696 36.5
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 1.7e-54 218.4 283 50.5
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 5.1e-54 216.9 667 36.3
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 1.5e-53 215.3 679 34.5
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 9.6e-53 212.6 540 36.5
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 1.7e-49 201.8 594 34.7
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 1.4e-43 182.2 718 34.7
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 5.5e-40 170.2 650 32.5
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 9.3e-40 169.5 636 33.0
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 2.3e-38 164.9 526 33.7
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 3.0e-38 164.5 660 35.8
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 9.6e-37 159.5 240 44.6
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 1.6e-36 158.7 660 31.8
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 4.8e-36 157.1 651 32.3
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 4.0e-35 154.1 652 31.3
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 5.3e-35 153.7 692 32.9
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 6.9e-35 153.3 670 32.1
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 1.2e-34 152.5 642 32.9
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 4.5e-34 150.6 656 31.2
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 2.7e-31 141.4 559 31.7
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 1.3e-30 139.0 613 33.6
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 3.0e-30 137.9 557 32.3
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 3.0e-30 137.9 210 45.2
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 1.4e-22 112.5 657 31.5
Sed0026296 Sechium edule HOM05D002002 ORTHO05D008797 1.8e-22 112.1 245 41.2
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 7.4e-21 106.7 524 30.5
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 9.7e-21 106.3 654 27.1
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 9.7e-21 106.3 654 27.1
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 1.3e-20 105.9 654 27.4
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 1.7e-20 105.5 146 47.9
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 3.7e-20 104.4 256 37.5
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 5.0e-17 94.0 134 50.0
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 7.9e-15 86.7 107 45.8
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 5.1e-14 84.0 452 27.4
TPR.G1066 Trifolium pratense HOM05D002002 ORTHO05D008797 2.6e-13 81.6 110 48.2
GSVIVG01005755001 Vitis vinifera HOM05D002002 ORTHO05D008797 2.6e-13 81.6 89 59.6
TPR.G3084 Trifolium pratense HOM05D002002 ORTHO05D012248 3.3e-13 81.3 112 48.2
Sed0017129 Sechium edule HOM05D002002 ORTHO05D008797 9.7e-13 79.7 241 34.0
TPR.G24664 Trifolium pratense HOM05D002002 ORTHO05D008797 4.5e-10 70.9 74 54.1
TPR.G3088 Trifolium pratense HOM05D001978 ORTHO05D010457 1.0e-06 59.7 173 37.6
Lj6P812T17 Lonicera japonica HOM05D002002 ORTHO05D008797 5.2e-06 57.4 158 36.7


User provided reference genes

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