Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 0.0e+00 1103.2 629 100.0
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.6e-216 756.5 628 70.9
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 4.4e-214 748.4 558 80.5
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.3e-213 744.6 628 68.6
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 9.1e-212 740.7 628 68.8
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.3e-210 736.9 655 66.9
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.5e-210 734.2 628 67.8
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.0e-200 701.0 640 60.9
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.8e-188 663.3 648 62.8
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.5e-185 653.7 637 62.6
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.6e-184 650.2 640 60.6
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 3.6e-184 649.0 647 60.0
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 6.8e-183 644.8 635 59.4
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.7e-181 640.2 635 62.4
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.1e-180 637.5 639 60.9
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 7.8e-179 631.3 633 60.0
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.1e-177 627.5 639 60.1
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 2.5e-177 626.3 651 56.2
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 5.6e-177 625.2 633 59.7
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.1e-176 623.2 636 60.4
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 1.9e-169 600.1 639 58.7
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 3.4e-166 589.3 664 54.5
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.2e-165 586.6 642 58.9
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 2.9e-165 586.3 636 56.6
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.4e-164 583.9 635 55.6
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 2.1e-163 580.1 642 56.5
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 3.0e-162 576.2 625 58.9
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 8.6e-162 574.7 635 56.1
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 5.6e-161 572.0 629 54.2
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 3.6e-160 569.3 642 55.5
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 4.7e-160 568.9 649 55.5
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.4e-159 567.4 631 54.0
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 5.2e-159 565.5 642 55.9
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 5.2e-159 565.5 639 55.7
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 7.6e-158 561.6 643 54.7
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 4.0e-151 539.3 637 50.7
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 9.9e-150 534.6 641 53.7
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 6.4e-149 531.9 642 51.7
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 2.4e-148 530.0 641 51.5
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 3.2e-148 529.6 636 56.1
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 4.6e-147 525.8 642 53.9
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 6.7e-146 521.9 638 51.9
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-145 521.2 638 48.7
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 3.7e-144 516.2 624 50.6
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 3.7e-144 516.2 677 50.8
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.8e-143 513.8 630 50.5
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.7e-141 507.3 664 47.3
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 2.4e-140 503.4 635 51.5
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.3e-138 497.7 540 56.7
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 3.9e-138 496.1 633 52.4
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 3.9e-138 496.1 633 52.6
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 3.9e-138 496.1 636 49.4
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 2.8e-136 490.0 612 50.0
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 8.2e-136 488.4 631 52.1
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 2.4e-135 486.9 600 51.2
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 1.0e-133 481.5 653 50.4
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.3e-133 481.1 646 50.9
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.3e-133 481.1 652 50.2
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 9.7e-129 464.9 631 50.1
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 3.1e-127 459.9 633 49.8
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 5.3e-127 459.1 674 49.9
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-124 451.4 637 45.2
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 3.2e-124 449.9 630 48.3
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 7.9e-123 445.3 466 58.4
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.0e-122 444.9 692 44.8
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 3.9e-122 443.0 628 50.5
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 5.3e-119 432.6 622 49.7
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 9.1e-119 431.8 625 48.5
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.5e-118 431.0 652 48.2
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.5e-118 431.0 636 47.8
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 3.4e-118 429.9 633 47.1
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.8e-117 426.4 635 46.5
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 5.0e-117 426.0 630 44.8
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 8.5e-117 425.2 630 47.0
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.2e-115 421.4 619 47.7
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.6e-115 421.0 640 47.5
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 2.1e-115 420.6 633 46.1
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 3.9e-114 416.4 620 50.2
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 8.8e-114 415.2 622 49.0
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 2.0e-113 414.1 627 49.8
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 3.1e-111 406.8 637 44.1
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 5.3e-111 406.0 633 48.7
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 7.7e-110 402.1 634 45.1
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 5.0e-109 399.4 559 45.8
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 2.3e-106 390.6 628 43.9
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 8.8e-106 388.7 336 62.2
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 8.2e-104 382.1 631 44.4
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 2.4e-103 380.6 625 47.4
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 2.9e-101 373.6 485 52.8
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 3.2e-100 370.2 542 45.2
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 1.0e-98 365.2 332 56.9
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 9.7e-97 358.6 310 59.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 6.3e-96 355.9 630 44.3
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 9.1e-95 352.1 658 38.1
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 5.9e-94 349.4 307 58.3
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 9.1e-87 325.5 453 53.0
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 2.3e-85 320.9 525 47.2
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 4.2e-84 316.6 560 42.5
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.5e-84 316.2 544 43.4
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.6e-83 313.5 475 49.3
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.8e-82 311.2 266 58.3
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 4.4e-81 306.6 646 37.3
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 2.2e-80 304.3 451 43.5
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 5.4e-79 299.7 626 37.5
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 7.0e-79 299.3 265 58.1
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 7.0e-79 299.3 263 56.3
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 1.3e-77 295.0 220 67.3
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.2e-72 277.7 243 59.7
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.2e-70 271.9 241 59.8
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.3e-69 268.5 313 48.9
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.3e-69 268.5 615 38.4
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.3e-64 251.9 597 33.8
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 2.1e-62 244.6 650 29.2
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.8e-59 234.2 242 53.7
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 4.7e-59 233.4 284 49.3
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 1.4e-58 231.9 217 58.1
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.2e-56 224.6 399 46.9
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.1e-54 218.0 369 50.7
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 8.6e-53 212.6 692 32.8
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 2.5e-52 211.1 180 56.7
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.6e-49 201.1 400 45.8
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.9e-47 194.9 153 64.7
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.9e-47 194.9 243 48.6
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.7e-43 180.3 238 46.2
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 6.2e-43 179.9 180 48.9
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 3.6e-35 154.1 232 43.1
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.8e-35 153.7 445 39.3
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 3.1e-34 151.0 122 57.4
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-33 148.7 123 60.2
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 7.6e-33 146.4 169 40.8
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 1.3e-32 145.6 272 30.9
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 4.9e-32 143.7 122 59.0
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 8.4e-32 142.9 302 32.5
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 3.5e-30 137.5 187 44.9
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 5.1e-29 133.7 149 49.0
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.3e-28 130.6 100 66.0
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 7.4e-28 129.8 170 49.4
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.8e-26 125.2 247 38.5
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.4e-26 124.8 89 62.9
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.5e-25 122.1 227 34.8
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.5e-25 120.6 142 52.1
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 1.7e-24 118.6 202 42.1
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 2.4e-23 114.8 272 37.5
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 4.2e-23 114.0 282 33.3
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 1.6e-22 112.1 198 38.4
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 1.6e-22 112.1 198 38.4
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 1.6e-22 112.1 265 30.2
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 1.0e-21 109.4 217 39.2
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.0e-21 109.4 194 40.7
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-21 109.0 202 37.6
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 2.3e-21 108.2 205 40.0
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.9e-21 107.5 173 48.0
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 6.7e-21 106.7 182 39.6
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 8.7e-21 106.3 196 34.2
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 1.1e-20 105.9 170 48.2
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 2.1e-19 101.7 171 39.2
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 3.7e-19 100.9 476 29.6
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 1.1e-18 99.4 78 59.0
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 2.4e-18 98.2 72 72.2
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 2.6e-17 94.7 187 38.5
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 3.4e-17 94.4 119 44.5
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.9e-16 90.5 80 56.2
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 9.3e-15 86.3 157 38.2
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 1.6e-14 85.5 182 36.3
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.7e-14 84.7 108 44.4
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 4.6e-14 84.0 78 60.3
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 1.0e-13 82.8 107 43.9
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.5e-12 78.2 74 54.1
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 2.2e-11 75.1 225 37.3
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 1.4e-10 72.4 49 67.3
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 4.1e-10 70.9 77 49.4
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 4.1e-10 70.9 159 35.8
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-08 65.9 66 51.5
BcaC02g12092 Brassica carinata HOM05D003570 ORTHO05D004207 2.9e-08 64.7 48 56.2
CAN.G149.33 Capsicum annuum HOM05D001546 ORTHO05D015824 5.0e-08 63.9 67 49.3
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 6.5e-08 63.5 108 34.3
C02p46270 Brassica napus HOM05D003570 ORTHO05D027618 4.2e-07 60.8 97 36.1
A02p29200 Brassica napus HOM05D003570 ORTHO05D027618 9.4e-07 59.7 76 40.8
BolC4t26886H Brassica oleracea HOM05D003570 ORTHO05D004207 9.4e-07 59.7 48 54.2
BraA02t07950Z Brassica rapa HOM05D003570 ORTHO05D027618 9.4e-07 59.7 76 40.8
Solyc04g026000.2 Solanum lycopersicum HOM05D003570 ORTHO05D004207 2.7e-06 58.2 126 30.2


User provided reference genes

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