Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 0.0e+00 1464.5 811 100.0
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 0.0e+00 1199.1 825 81.2
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 8.3e-311 1070.1 815 75.0
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.1e-309 1065.4 814 74.2
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 2.8e-306 1055.0 828 72.8
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 1.3e-295 1019.6 833 67.8
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.4e-294 1016.1 821 71.0
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 4.7e-293 1011.1 825 69.0
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 3.0e-292 1008.4 841 67.3
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.8e-290 1001.1 807 69.6
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 4.5e-288 994.6 823 68.7
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 5.9e-288 994.2 764 73.8
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.3e-287 993.0 855 66.8
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 2.9e-287 991.9 836 66.6
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 4.7e-285 984.6 824 69.7
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 3.0e-284 981.9 829 68.8
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.7e-282 974.9 887 65.8
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 6.3e-282 974.2 808 65.8
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 8.2e-282 973.8 825 67.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 7.0e-281 970.7 813 69.0
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 3.5e-280 968.4 813 68.1
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.8e-279 964.9 823 67.2
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 8.5e-279 963.8 863 62.9
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.2e-278 961.4 813 67.9
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 6.1e-277 957.6 854 64.5
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 8.8e-276 953.7 812 68.2
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 1.5e-275 953.0 781 69.0
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 3.4e-275 951.8 838 65.8
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 9.1e-273 943.7 828 66.3
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 1.2e-272 943.3 811 65.2
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 7.7e-272 940.6 817 66.0
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.3e-271 939.1 826 66.7
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.6e-269 932.9 811 68.7
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.2e-266 922.5 819 66.3
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 2.2e-266 922.5 807 65.1
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 2.2e-266 922.5 807 63.6
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.9e-266 921.4 826 65.7
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.1e-265 920.2 810 63.8
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 5.4e-265 917.9 810 64.2
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 9.2e-265 917.1 818 66.6
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.2e-264 916.8 828 64.0
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 2.7e-264 915.6 805 64.7
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 4.5e-264 914.8 796 63.4
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 5.9e-264 914.4 822 65.6
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 7.8e-264 914.1 808 65.0
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.7e-263 912.9 827 63.5
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.3e-263 912.5 806 63.4
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 2.9e-263 912.1 825 63.4
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 5.0e-263 911.4 802 64.0
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 8.6e-263 910.6 799 64.1
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.1e-262 910.2 815 63.4
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 7.3e-262 907.5 811 62.1
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.1e-261 906.0 819 66.5
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.1e-261 906.0 818 63.3
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 7.5e-259 897.5 816 65.0
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 6.4e-258 894.4 819 62.5
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.1e-257 893.6 841 63.4
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.8e-257 892.9 830 61.7
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.6e-256 889.8 808 64.7
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 2.0e-256 889.4 818 64.5
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.9e-254 882.9 803 63.6
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 7.3e-254 880.9 809 62.1
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 3.6e-253 878.6 817 64.3
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 4.4e-251 871.7 832 60.8
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 8.3e-250 867.5 835 60.8
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 1.9e-249 866.3 803 62.4
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.4e-249 865.9 805 62.6
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 3.2e-249 865.5 822 62.9
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 4.1e-249 865.1 804 63.7
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 7.0e-249 864.4 812 62.6
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 1.0e-247 860.5 835 60.6
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 2.5e-246 855.9 827 58.9
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 9.5e-246 854.0 797 64.1
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.3e-244 849.4 822 60.6
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.6e-243 845.9 813 61.4
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 3.7e-242 842.0 813 60.3
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 4.1e-241 838.6 820 60.9
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.6e-240 836.6 798 60.5
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.1e-239 831.6 807 61.1
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 1.5e-238 830.1 826 61.7
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 7.3e-238 827.8 832 59.1
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.4e-236 823.5 815 59.5
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 7.3e-222 774.6 756 58.9
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.6e-222 774.2 811 55.1
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 1.9e-217 760.0 693 64.6
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 9.3e-217 757.7 823 58.6
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 4.6e-216 755.4 823 57.6
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.1e-213 744.6 803 55.9
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.4e-212 743.8 823 57.7
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.4e-212 743.0 822 58.0
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 7.6e-211 738.0 826 57.1
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 3.8e-210 735.7 826 57.0
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 5.5e-209 731.9 837 51.0
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 4.6e-208 728.8 662 63.7
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 2.1e-205 719.9 825 56.4
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.8e-205 719.5 825 56.0
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.0e-202 711.1 824 56.8
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.9e-201 706.8 826 54.5
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 3.3e-198 696.0 812 55.0
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 3.4e-195 686.0 825 54.4
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.0e-194 684.5 806 52.4
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.7e-194 683.7 816 53.9
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 5.0e-194 682.2 794 51.1
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.5e-193 679.9 930 47.8
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 4.2e-193 679.1 790 51.1
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 6.1e-192 675.2 794 50.9
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 1.4e-183 647.5 818 49.6
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.3e-181 641.0 813 50.3
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 6.1e-176 622.1 597 62.0
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 7.0e-172 608.6 849 45.5
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.6e-171 607.4 760 51.4
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 8.0e-160 568.5 439 68.1
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 2.3e-159 567.0 732 51.1
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 5.2e-159 565.8 646 59.6
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.9e-153 547.4 694 51.0
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 3.3e-145 520.0 556 60.6
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 1.2e-144 518.1 737 46.8
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.1e-140 505.0 488 64.5
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.8e-136 490.3 466 60.1
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 6.8e-135 485.7 884 41.9
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 6.8e-135 485.7 523 57.0
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.3e-133 478.8 852 42.3
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.5e-129 467.2 531 59.1
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.3e-122 444.9 424 67.0
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 2.0e-118 431.0 346 66.2
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.9e-117 427.2 276 79.3
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.3e-113 413.7 315 68.9
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 8.4e-101 372.5 837 38.0
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 5.1e-98 363.2 462 47.2
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 1.3e-96 358.6 529 43.7
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.9e-92 344.7 900 35.4
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 1.0e-90 339.0 542 40.2
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.2e-86 325.5 649 40.2
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 1.3e-85 322.0 789 33.8
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.7e-85 321.6 440 46.1
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 3.6e-67 260.8 355 54.9
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.5e-60 238.0 384 49.5
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.8e-58 231.9 213 62.9
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 9.7e-57 226.1 233 61.8
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.3e-56 225.7 793 28.6
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.6e-54 218.8 404 39.4
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-44 185.7 307 43.6
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.5e-44 183.7 328 41.2
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 4.9e-40 170.6 141 63.1
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 5.0e-37 160.6 137 63.5
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 9.2e-31 139.8 136 55.1
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-28 132.5 142 52.1
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 6.2e-27 127.1 102 67.6
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 5.2e-26 124.0 130 59.2
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 5.8e-25 120.6 98 61.2
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-23 115.5 209 39.7
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-23 114.8 295 31.5
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 9.2e-23 113.2 94 62.8
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.6e-22 110.9 352 31.8
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-21 108.6 290 33.4
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.3e-20 104.8 131 46.6
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 8.1e-19 100.1 87 58.6
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 4.0e-18 97.8 220 38.2
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 8.9e-18 96.7 80 62.5
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-17 95.5 76 60.5
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.7e-16 92.4 248 31.9
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.2e-16 92.0 158 44.3
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.0e-14 84.0 80 51.2
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.0e-13 83.2 160 43.8
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 3.9e-13 81.3 86 54.7
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-12 79.0 164 36.0
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 4.3e-12 77.8 71 63.4
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 5.6e-12 77.4 72 56.9
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 7.3e-12 77.0 81 50.6
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 1.6e-11 75.9 170 37.1
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 2.3e-10 72.0 55 67.3
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 6.8e-10 70.5 51 74.5
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 7.6e-09 67.0 90 51.1
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.6e-09 67.0 65 55.4
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.2e-08 65.5 140 35.7
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 2.9e-08 65.1 125 39.2
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 8.4e-08 63.5 64 51.6
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 8.4e-08 63.5 41 68.3
HPP92_028511 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.4e-08 63.5 200 33.0
HPP92_006873 Vanilla planifolia HOM05D000450 ORTHO05D002608 1.4e-07 62.8 160 33.1
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.4e-07 62.8 57 59.6
Lsat_1_v5_gn_2_63120 Lactuca sativa HOM05D005044 ORTHO05D006799 2.7e-06 58.5 91 48.4
HPP92_028506 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.8e-06 57.0 36 77.8


User provided reference genes

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