Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G238000 Prunus persica HOM05D000328 ORTHO05D000191 1.8e-66 255.8 127 100.0
Prupe.8G184600 Prunus persica HOM05D000328 ORTHO05D000191 4.0e-50 201.4 117 89.7
MD10G1146200 Malus domestica HOM05D000328 ORTHO05D000191 2.7e-38 162.2 98 83.7
MD05G1151900 Malus domestica HOM05D000328 ORTHO05D000191 4.3e-36 154.8 98 79.6
FvH4_2g17300 Fragaria vesca HOM05D000328 ORTHO05D000191 5.3e-34 147.9 98 75.5
FAN24G0970 Fragaria x ananassa HOM05D000328 ORTHO05D000191 5.3e-34 147.9 98 75.5
RcHm_v2.0_Chr6g0281811 Rosa chinensis HOM05D000328 ORTHO05D000191 6.9e-34 147.5 102 72.5
FAN27G1462 Fragaria x ananassa HOM05D000328 ORTHO05D000191 1.2e-33 146.7 98 74.5
FAN27G1618 Fragaria x ananassa HOM05D000328 ORTHO05D000501 1.2e-33 146.7 98 74.5
FAN15G3637 Fragaria x ananassa HOM05D000328 ORTHO05D000191 4.5e-33 144.8 98 73.5
TPR.G5077 Trifolium pratense HOM05D000328 ORTHO05D000191 1.4e-26 123.2 94 64.9
Sabra14G0132900 Salix brachista HOM05D000328 ORTHO05D000191 3.1e-26 122.1 96 61.5
Manes.13G057900 Manihot esculenta HOM05D000328 ORTHO05D000191 6.9e-26 120.9 95 62.1
Potri.014G197500 Populus trichocarpa HOM05D000328 ORTHO05D000191 9.0e-26 120.6 96 61.5
TAR362G1244 Trochodendron aralioides HOM05D000328 ORTHO05D000191 9.0e-26 120.6 97 63.9
Psat4g159040 Pisum sativum HOM05D000328 ORTHO05D000191 1.2e-25 120.2 94 63.8
Medtr8g028075 Medicago truncatula HOM05D000328 ORTHO05D000191 2.0e-25 119.4 94 62.8
Glyma.07G059200 Glycine max HOM05D000328 ORTHO05D000191 1.3e-24 116.7 93 61.3
Haze_03553 Corylus avellana HOM05D000328 ORTHO05D000191 2.2e-24 115.9 106 61.3
Ca_23575_v3 Cicer arietinum L. HOM05D000328 ORTHO05D000191 3.8e-24 115.2 93 57.0
Ca_23584_v3 Cicer arietinum L. HOM05D000328 ORTHO05D000191 3.8e-24 115.2 93 57.0
Actinidia23135 Actinidia chinensis HOM05D000328 ORTHO05D000191 4.9e-24 114.8 104 56.7
Dinv28777 Davidia involucrata HOM05D000328 ORTHO05D000191 1.1e-23 113.6 98 60.2
Atru.chr6.3475 Acer truncatum HOM05D000328 ORTHO05D000191 1.4e-23 113.2 98 62.2
Actinidia11651 Actinidia chinensis HOM05D000328 ORTHO05D000191 1.9e-23 112.8 116 50.9
PGR083G0961 Punica granatum HOM05D000328 ORTHO05D000191 3.2e-23 112.1 97 56.7
TWI18G0770 Tripterygium wilfordii HOM05D000328 ORTHO05D000191 3.2e-23 112.1 94 58.5
Duzib138G0835 Durio zibethinus HOM05D000328 ORTHO05D000191 4.2e-23 111.7 104 56.7
Glyma.16G028100 Glycine max HOM05D000328 ORTHO05D000191 4.2e-23 111.7 94 58.5
CSS0047235 Camellia sinensis var. sinensis HOM05D000328 ORTHO05D000191 5.5e-23 111.3 96 60.4
QL09p044963 Quercus lobata HOM05D000328 ORTHO05D000191 5.5e-23 111.3 100 59.0
Lj3g0019904 Lotus japonicus HOM05D000328 ORTHO05D000191 7.1e-23 110.9 103 56.3
Phvul.010G110300 Phaseolus vulgaris HOM05D000328 ORTHO05D000191 1.2e-22 110.2 103 54.4
SGA_v2.0_scaffold77G25322 Striga asiatica HOM05D000328 ORTHO05D000191 1.6e-22 109.8 98 53.1
CiPaw.13G058800 Carya illinoinensis HOM05D000328 ORTHO05D000191 6.0e-22 107.8 89 59.6
arahy.Tifrunner.gnm1.ann1.6AFN3K Arachis hypogaea HOM05D000328 ORTHO05D000501 7.9e-22 107.5 96 58.3
arahy.Tifrunner.gnm1.ann1.PU0L3U Arachis hypogaea HOM05D000328 ORTHO05D000191 7.9e-22 107.5 96 58.3
Duzib133G0251 Durio zibethinus HOM05D000328 ORTHO05D000191 7.9e-22 107.5 99 59.6
Aqoxy7G00818 Aquilegia oxysepala HOM05D000328 ORTHO05D000191 1.3e-21 106.7 100 56.0
Lalb_Chr17g0342281 Lupinus albus HOM05D000328 ORTHO05D000191 1.3e-21 106.7 103 54.4
PSO017G3417 Papaver somniferum HOM05D000328 ORTHO05D000191 3.0e-21 105.5 106 53.8
VMungo0331G1948 Vigna mungo HOM05D000328 ORTHO05D000191 3.0e-21 105.5 94 55.3
Sopen09g012750 Solanum pennellii HOM05D000328 ORTHO05D000191 6.7e-21 104.4 82 63.4
TWI75G1024 Tripterygium wilfordii HOM05D000328 ORTHO05D000191 6.7e-21 104.4 103 52.4
Ciclev10015681m.g Citrus clementina HOM05D000328 ORTHO05D000191 8.7e-21 104.0 98 55.1
Gohir.D11G151700 Gossypium hirsutum HOM05D000328 ORTHO05D000191 8.7e-21 104.0 104 52.9
Gorai.007G162400 Gossypium raimondii HOM05D000328 ORTHO05D000191 8.7e-21 104.0 104 52.9
Nn1g09719 Nelumbo nucifera HOM05D000328 ORTHO05D000191 8.7e-21 104.0 103 54.4
Peaxi162Scf00424g00814 Petunia axillaris HOM05D000328 ORTHO05D000191 8.7e-21 104.0 83 62.7
vmacro02848 Vaccinium macrocarpon HOM05D000328 ORTHO05D000191 8.7e-21 104.0 103 52.4
Eucgr.H00679 Eucalyptus grandis HOM05D000328 ORTHO05D000191 1.1e-20 103.6 106 51.9
Oeu058215.1 Olea europaea HOM05D000328 ORTHO05D000191 1.1e-20 103.6 105 50.5
Nitab4.5_0010253g0010 Nicotiana tabacum HOM05D000328 ORTHO05D000191 1.5e-20 103.2 100 56.0
Solyc09g019980.3 Solanum lycopersicum HOM05D000328 ORTHO05D000191 1.5e-20 103.2 97 55.7
PGSC0003DMG400027681 Solanum tuberosum HOM05D000328 ORTHO05D000191 1.5e-20 103.2 101 53.5
HanXRQChr08g0231251 Helianthus annuus HOM05D000328 ORTHO05D000191 1.9e-20 102.8 122 46.7
Hma1.2p1_0161F.1_g071820 Hydrangea macrophylla HOM05D000328 ORTHO05D000191 1.9e-20 102.8 105 51.4
Peaxi162Scf00390g00026 Petunia axillaris HOM05D000328 ORTHO05D000191 2.5e-20 102.4 102 53.9
CANSAT25G0928 Cannabis sativa HOM05D000328 ORTHO05D000191 3.3e-20 102.1 102 56.9
Sopen06g034220 Solanum pennellii HOM05D000328 ORTHO05D000191 3.3e-20 102.1 101 52.5
Cc01_g15760 Coffea canephora HOM05D000328 ORTHO05D000191 4.3e-20 101.7 85 56.5
Nn1g09715 Nelumbo nucifera HOM05D000328 ORTHO05D000191 5.7e-20 101.3 97 56.7
Nitab4.5_0001015g0050 Nicotiana tabacum HOM05D000328 ORTHO05D000191 7.4e-20 100.9 100 55.0
PGSC0003DMG400020292 Solanum tuberosum HOM05D000328 ORTHO05D000191 9.7e-20 100.5 98 55.1
THA.LOC104802637 Tarenaya hassleriana HOM05D000328 ORTHO05D000191 9.7e-20 100.5 98 54.1
CAN.G874.47 Capsicum annuum HOM05D000328 ORTHO05D000191 1.6e-19 99.8 104 51.0
Nn1g09716 Nelumbo nucifera HOM05D000328 ORTHO05D000191 1.6e-19 99.8 97 51.5
DCAR_012711 Daucus carota HOM05D001091 ORTHO05D001020 2.2e-19 99.4 85 58.8
Rhsim13G0055900 Rhododendron simsii HOM05D000328 ORTHO05D000191 2.8e-19 99.0 104 50.0
Solyc06g082860.4 Solanum lycopersicum HOM05D000328 ORTHO05D000191 6.3e-19 97.8 79 57.0
Nn1g09720 Nelumbo nucifera HOM05D000328 ORTHO05D000191 8.2e-19 97.4 99 51.5
MSTRG.17950 Avicennia marina HOM05D000328 ORTHO05D000191 1.1e-18 97.1 97 51.5
Medtr8g028070 Medicago truncatula HOM05D000328 ORTHO05D000191 1.4e-18 96.7 104 50.0
CDE09G0577 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 1.8e-18 96.3 98 54.1
SEGI_08923 Sequoiadendron giganteum HOM05D000328 ORTHO05D000191 1.8e-18 96.3 101 51.5
Sp4g26850 Schrenkiella parvula HOM05D000328 ORTHO05D000191 2.4e-18 95.9 98 52.0
CDE09G1174 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 4.1e-18 95.1 97 49.5
Nn7g37606 Nelumbo nucifera HOM05D000328 ORTHO05D000191 5.3e-18 94.7 88 51.1
Peaxi162Scf00390g00027 Petunia axillaris HOM05D000328 ORTHO05D000191 5.3e-18 94.7 88 53.4
PSO675G7649 Papaver somniferum HOM05D000328 ORTHO05D000191 6.9e-18 94.4 104 51.0
BcaB04g21283 Brassica carinata HOM05D000328 ORTHO05D000191 1.5e-17 93.2 98 50.0
BolC1t05543H Brassica oleracea HOM05D000328 ORTHO05D000191 1.5e-17 93.2 98 50.0
Nn1g09728 Nelumbo nucifera HOM05D000328 ORTHO05D000191 1.5e-17 93.2 103 49.5
Nn7g37608 Nelumbo nucifera HOM05D000328 ORTHO05D000191 1.5e-17 93.2 96 53.1
Migut.N00687 Erythranthe guttata HOM05D000328 ORTHO05D000191 2.0e-17 92.8 87 49.4
PSO017G3821 Papaver somniferum HOM05D000328 ORTHO05D000191 2.0e-17 92.8 104 44.2
CDE02G4780 Ceratophyllum demersum HOM05D000328 ORTHO05D009070 2.6e-17 92.4 100 50.0
BolC1t05544H Brassica oleracea HOM05D000328 ORTHO05D000191 3.4e-17 92.0 101 47.5
Carub.0003s0714 Capsella rubella HOM05D000328 ORTHO05D000191 3.4e-17 92.0 100 50.0
Nn1g09717 Nelumbo nucifera HOM05D000328 ORTHO05D000191 3.4e-17 92.0 103 44.7
BraA01t04374Z Brassica rapa HOM05D000328 ORTHO05D000191 4.5e-17 91.7 101 48.5
Hund09494 Selenicereus undatus HOM05D000328 ORTHO05D000191 4.5e-17 91.7 95 47.4
AL3G18930 Arabidopsis lyrata HOM05D000328 ORTHO05D000191 5.9e-17 91.3 101 47.5
BraA01t04373Z Brassica rapa HOM05D000328 ORTHO05D000191 5.9e-17 91.3 117 43.6
Lsat_1_v5_gn_9_15801 Lactuca sativa HOM05D000328 ORTHO05D000191 5.9e-17 91.3 106 45.3
Nn1g09718 Nelumbo nucifera HOM05D000328 ORTHO05D000191 5.9e-17 91.3 108 41.7
VMungo0331G0112 Vigna mungo HOM05D000328 ORTHO05D000191 5.9e-17 91.3 89 52.8
AT3G07570 Arabidopsis thaliana HOM05D000328 ORTHO05D000191 7.6e-17 90.9 102 47.1
Migut.N00686 Erythranthe guttata HOM05D000328 ORTHO05D000191 7.6e-17 90.9 106 47.2
Lsat_1_v5_gn_8_98681 Lactuca sativa HOM05D000328 ORTHO05D000191 1.0e-16 90.5 103 44.7
Sc05g0001570 Simmondsia chinensis HOM05D000328 ORTHO05D000191 1.0e-16 90.5 104 45.2
Phvul.010G110400 Phaseolus vulgaris HOM05D000328 ORTHO05D000191 1.3e-16 90.1 89 51.7
A03p35360 Brassica napus HOM05D000328 ORTHO05D000191 1.7e-16 89.7 77 54.5
A05p40620 Brassica napus HOM05D000328 ORTHO05D000191 1.7e-16 89.7 101 47.5
BraA03t12713Z Brassica rapa HOM05D000328 ORTHO05D000191 2.2e-16 89.4 77 54.5
HanXRQChr11g0347331 Helianthus annuus HOM05D000328 ORTHO05D000191 2.2e-16 89.4 90 50.0
BolC5t34627H Brassica oleracea HOM05D000328 ORTHO05D000191 2.9e-16 89.0 77 54.5
BcaC01g04275 Brassica carinata HOM05D000328 ORTHO05D000191 3.8e-16 88.6 98 48.0
C03p42960 Brassica napus HOM05D000328 ORTHO05D000191 3.8e-16 88.6 98 48.0
C05p59730 Brassica napus HOM05D000328 ORTHO05D000191 3.8e-16 88.6 77 53.2
BcaB04g21284 Brassica carinata HOM05D000328 ORTHO05D000191 6.5e-16 87.8 101 43.6
Aa31LG5G18130 Aethionema arabicum HOM05D000328 ORTHO05D000191 8.5e-16 87.4 103 43.7
HanXRQChr05g0134411 Helianthus annuus HOM05D000328 ORTHO05D000191 8.5e-16 87.4 97 49.5
unitig_62.g23640 Utricularia gibba HOM05D000328 ORTHO05D000992 8.5e-16 87.4 83 51.8
Nn7g37609 Nelumbo nucifera HOM05D000328 ORTHO05D000191 1.1e-15 87.0 103 44.7
BcaB03g14692 Brassica carinata HOM05D000328 ORTHO05D000191 1.4e-15 86.7 76 52.6
TPR.G1090 Trifolium pratense HOM05D000003 ORTHO05D000004 1.4e-15 86.7 95 48.4
BolC3t16564H Brassica oleracea HOM05D000328 ORTHO05D000191 1.9e-15 86.3 77 55.8
Thhalv10020960m.g Eutrema salsugineum HOM05D000328 ORTHO05D000191 1.9e-15 86.3 95 45.3
TPR.G5107 Trifolium pratense HOM05D000328 ORTHO05D000191 4.2e-15 85.1 95 46.3
BraA05t22793Z Brassica rapa HOM05D000328 ORTHO05D000191 7.2e-15 84.3 101 44.6
Sp4g26860 Schrenkiella parvula HOM05D000328 ORTHO05D000191 9.4e-15 84.0 101 42.6
Zm00001eb078640 Zea mays HOM05D000328 ORTHO05D000191 9.4e-15 84.0 123 32.5
CARHR082270 Cardamine hirsuta HOM05D000328 ORTHO05D000191 4.6e-14 81.6 97 42.3
Sp3g06510 Schrenkiella parvula HOM05D000328 ORTHO05D000191 6.1e-14 81.3 77 45.5
unitig_52.g17418 Utricularia gibba HOM05D002050 ORTHO05D001949 6.1e-14 81.3 100 43.0
Nitab4.5_0012925g0020 Nicotiana tabacum HOM05D000328 ORTHO05D000191 1.0e-13 80.5 101 48.5
Nitab4.5_0001348g0220 Nicotiana tabacum HOM05D000328 ORTHO05D000191 1.8e-13 79.7 101 47.5
Os01g0895300 Oryza sativa ssp. japonica HOM05D000328 ORTHO05D000191 3.0e-13 79.0 98 40.8
Os01g0895200 Oryza sativa ssp. japonica HOM05D000328 ORTHO05D000191 1.9e-12 76.3 79 44.3
Os04g0495400 Oryza sativa ssp. japonica HOM05D000328 ORTHO05D000191 9.7e-12 73.9 63 46.0
ATR0602G010 Amborella trichopoda HOM05D000328 ORTHO05D000191 2.2e-11 72.8 79 45.6
HPP92_024621 Vanilla planifolia HOM05D000328 ORTHO05D000191 2.4e-10 69.3 110 35.5
AUR62008048 Chenopodium quinoa HOM05D000328 ORTHO05D000191 4.1e-10 68.6 110 35.5
MBI06_g08474_MAGBIO Magnolia biondii HOM05D000328 ORTHO05D000191 1.2e-09 67.0 113 36.3
GSVIVG01001902001 Vitis vinifera HOM05D000328 ORTHO05D000191 1.5e-09 66.6 43 69.8
AUR62028623 Chenopodium quinoa HOM05D000328 ORTHO05D000191 2.6e-09 65.9 63 49.2
ECA236G3207 Erigeron canadensis HOM05D001091 ORTHO05D001020 5.9e-09 64.7 48 64.6
HPP92_008811 Vanilla planifolia HOM05D000328 ORTHO05D000191 2.2e-08 62.8 81 37.0
COL.COLO4_19732 Corchorus olitorius HOM05D000328 ORTHO05D000191 2.9e-08 62.4 43 60.5
Cpa.g.sc8.14 Carica papaya HOM05D000328 ORTHO05D000191 3.8e-08 62.0 42 66.7
MBI07_g07106_MAGBIO Magnolia biondii HOM05D000328 ORTHO05D000191 3.8e-08 62.0 82 43.9
SalBow2G1138 Salvia bowleyana HOM05D000328 ORTHO05D000191 1.1e-07 60.5 43 58.1
TAR629G0734 Trochodendron aralioides HOM05D000328 ORTHO05D000191 1.1e-07 60.5 102 36.3
MBI07_g02897_MAGBIO Magnolia biondii HOM05D000328 ORTHO05D000191 1.9e-07 59.7 41 65.9
Aqoxy5G04240 Aquilegia oxysepala HOM05D000328 ORTHO05D000191 3.2e-07 58.9 63 42.9
Hma1.2p1_0295F.1_g116750 Hydrangea macrophylla HOM05D000328 ORTHO05D000191 4.2e-07 58.5 107 38.3
Hma1.2p1_2936F.1_g330590 Hydrangea macrophylla HOM05D000328 ORTHO05D000191 4.2e-07 58.5 107 38.3
Nn3g19000 Nelumbo nucifera HOM05D000328 ORTHO05D000191 4.2e-07 58.5 54 51.9
Lsat_1_v5_gn_4_33100 Lactuca sativa HOM05D000328 ORTHO05D000191 5.5e-07 58.2 80 41.2
EL10Ac5g10568 Beta vulgaris HOM05D000328 ORTHO05D000191 7.2e-07 57.8 50 52.0
Dinv32586 Davidia involucrata HOM05D000328 ORTHO05D000191 9.4e-07 57.4 99 35.4
Duzib268G0250 Durio zibethinus HOM05D000328 ORTHO05D000191 9.4e-07 57.4 54 50.0
MD01G1080600 Malus domestica HOM05D000328 ORTHO05D000191 9.4e-07 57.4 70 41.4
PGR042G2131 Punica granatum HOM05D000328 ORTHO05D000191 9.4e-07 57.4 54 51.9
PSO135G0858 Papaver somniferum HOM05D000328 ORTHO05D000191 1.2e-06 57.0 105 40.0
Thecc.01G342800 Theobroma cacao HOM05D000328 ORTHO05D000191 1.2e-06 57.0 58 43.1
Dinv35116 Davidia involucrata HOM05D000328 ORTHO05D000191 2.1e-06 56.2 103 33.0
Oeu043232.1 Olea europaea HOM05D000328 ORTHO05D000191 2.1e-06 56.2 73 42.5
Sopen10g005260 Solanum pennellii HOM05D000328 ORTHO05D000191 2.1e-06 56.2 54 48.1
THA.LOC104802073 Tarenaya hassleriana HOM05D000328 ORTHO05D000191 2.1e-06 56.2 94 36.2
Gohir.D12G115800 Gossypium hirsutum HOM05D000328 ORTHO05D000191 2.7e-06 55.8 58 43.1
TWI23G1251 Tripterygium wilfordii HOM05D000328 ORTHO05D000191 2.7e-06 55.8 77 41.6
ECA234G4781 Erigeron canadensis HOM05D000328 ORTHO05D000191 3.6e-06 55.5 106 32.1
Gohir.A12G112200 Gossypium hirsutum HOM05D000328 ORTHO05D000191 4.7e-06 55.1 58 43.1
Gorai.008G125300 Gossypium raimondii HOM05D000328 ORTHO05D000191 4.7e-06 55.1 58 43.1
Os05g0556400 Oryza sativa ssp. japonica HOM05D000328 ORTHO05D000191 4.7e-06 55.1 58 46.6
Sabra14G0072300 Salix brachista HOM05D000328 ORTHO05D000191 4.7e-06 55.1 58 43.1
SEGI_37555 Sequoiadendron giganteum HOM05D000328 ORTHO05D000191 4.7e-06 55.1 98 38.8
A07p25710 Brassica napus HOM05D000328 ORTHO05D000191 6.1e-06 54.7 57 42.1
BraA07t30211Z Brassica rapa HOM05D000328 ORTHO05D000191 6.1e-06 54.7 57 42.1
CANSAT64G1869 Cannabis sativa HOM05D000328 ORTHO05D000191 6.1e-06 54.7 54 46.3
CANSAT64G2865 Cannabis sativa HOM05D000328 ORTHO05D000191 6.1e-06 54.7 54 46.3
CAN.G72.19 Capsicum annuum HOM05D000328 ORTHO05D000191 6.1e-06 54.7 54 46.3
Nitab4.5_0001715g0040 Nicotiana tabacum HOM05D000328 ORTHO05D000191 6.1e-06 54.7 54 44.4
Nitab4.5_0004463g0030 Nicotiana tabacum HOM05D000328 ORTHO05D000191 6.1e-06 54.7 54 44.4
PGSC0003DMG400007689 Solanum tuberosum HOM05D000328 ORTHO05D000191 6.1e-06 54.7 54 46.3
Zm00001eb156690 Zea mays HOM05D000328 ORTHO05D000191 6.1e-06 54.7 77 41.6
Aqoxy5G04241 Aquilegia oxysepala HOM05D000328 ORTHO05D000191 7.9e-06 54.3 97 34.0
MSTRG.4807 Avicennia marina HOM05D000328 ORTHO05D000191 7.9e-06 54.3 101 35.6
Duzib138G1551 Durio zibethinus HOM05D000328 ORTHO05D000191 7.9e-06 54.3 58 41.4


User provided reference genes

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