Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 2.3e-123 445.7 235 100.0
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 5.4e-109 397.9 237 90.3
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 5.1e-99 364.8 236 82.2
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 9.6e-98 360.5 233 82.0
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.3e-97 360.1 233 82.0
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.3e-97 360.1 233 82.0
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 3.6e-97 358.6 236 80.9
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 8.1e-97 357.5 233 81.5
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 2.2e-94 349.4 229 79.5
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 6.4e-94 347.8 235 77.9
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 2.1e-92 342.8 235 75.7
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 3.5e-92 342.0 235 74.9
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 3.9e-91 338.6 237 75.9
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 2.5e-90 335.9 240 75.0
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 1.6e-89 333.2 243 72.8
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 2.1e-89 332.8 243 76.1
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 4.8e-89 331.6 236 75.8
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 1.8e-88 329.7 231 74.0
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 7.6e-87 324.3 233 73.0
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 1.7e-86 323.2 236 73.3
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 3.8e-86 322.0 237 72.2
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 4.9e-86 321.6 226 72.6
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 6.4e-86 321.2 236 71.6
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 3.2e-85 318.9 241 70.5
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 1.6e-84 316.6 233 72.1
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 2.1e-84 316.2 232 71.6
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 3.5e-84 315.5 238 69.3
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 4.6e-84 315.1 236 71.6
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 7.9e-84 314.3 239 71.1
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 1.3e-83 313.5 233 70.4
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 1.3e-83 313.5 233 71.7
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 1.3e-83 313.5 233 72.1
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 1.3e-83 313.5 231 70.1
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 1.3e-83 313.5 234 72.2
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 3.9e-83 312.0 230 71.3
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 3.9e-83 312.0 230 71.3
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 5.1e-83 311.6 236 70.8
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 5.1e-83 311.6 230 71.3
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 5.1e-83 311.6 230 71.3
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 5.1e-83 311.6 249 69.1
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 6.7e-83 311.2 232 72.8
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 6.7e-83 311.2 232 71.6
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 1.1e-82 310.5 239 71.5
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 1.5e-82 310.1 233 71.2
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.9e-82 309.7 227 73.6
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 3.3e-82 308.9 236 69.9
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 3.3e-82 308.9 232 72.4
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 7.4e-82 307.8 237 69.6
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 9.6e-82 307.4 230 73.5
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 2.1e-81 306.2 235 69.8
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 4.8e-81 305.1 236 68.6
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 8.1e-81 304.3 237 70.0
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 8.1e-81 304.3 234 72.2
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 2.4e-80 302.8 235 71.1
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 1.5e-79 300.1 261 63.6
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 1.5e-79 300.1 188 80.9
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.5e-79 300.1 234 65.8
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 1.5e-79 300.1 233 70.0
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 2.6e-79 299.3 201 77.6
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 2.6e-79 299.3 227 70.5
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 3.4e-79 298.9 230 69.6
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 7.6e-79 297.7 236 66.1
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 7.6e-79 297.7 225 68.0
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 2.2e-78 296.2 236 65.7
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 3.8e-78 295.4 236 66.9
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 4.2e-77 292.0 234 64.1
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 5.5e-77 291.6 237 66.7
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 7.1e-77 291.2 241 68.0
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 2.3e-75 286.2 241 66.8
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 3.0e-75 285.8 237 67.5
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 3.0e-75 285.8 227 70.9
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 6.7e-75 284.6 229 66.4
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 2.5e-74 282.7 238 66.4
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 5.7e-74 281.6 237 66.7
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.8e-72 276.6 231 64.5
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 1.8e-72 276.6 239 63.6
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 1.8e-72 276.6 234 63.7
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 2.4e-72 276.2 216 67.1
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 9.0e-72 274.2 231 64.5
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 3.8e-70 268.9 231 64.5
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 7.9e-68 261.2 202 66.8
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 1.3e-67 260.4 240 62.9
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 5.1e-67 258.5 213 64.3
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 8.2e-65 251.1 241 59.3
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.1e-61 240.7 230 55.7
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 1.1e-61 240.7 240 58.8
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 1.1e-61 240.7 233 58.8
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 4.2e-61 238.8 236 57.6
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 4.2e-61 238.8 165 72.7
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 7.9e-60 234.6 230 57.8
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 1.0e-59 234.2 233 59.2
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 8.8e-59 231.1 183 66.1
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 9.7e-58 227.6 146 79.5
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 1.7e-57 226.9 145 79.3
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 8.2e-57 224.6 139 81.3
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 5.3e-56 221.9 193 62.2
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 2.7e-52 209.5 139 76.3
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 9.1e-48 194.5 123 79.7
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 2.6e-47 193.0 138 73.2
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 2.1e-44 183.3 230 50.9
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 1.8e-43 180.3 95 86.3
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 1.1e-40 171.0 190 50.0
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 2.7e-39 166.4 190 46.8
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 5.9e-39 165.2 229 48.5
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 5.0e-38 162.2 208 43.8
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 5.5e-37 158.7 180 45.0
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 2.1e-36 156.8 140 63.6
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 4.7e-36 155.6 134 62.7
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 1.2e-31 141.0 216 38.4
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 6.1e-28 128.6 165 40.0
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 2.3e-27 126.7 231 40.7
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 4.5e-23 112.5 92 67.4
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 5.2e-19 99.0 57 82.5
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 3.7e-17 92.8 93 59.1
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 3.1e-11 73.2 156 25.0
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 2.9e-09 66.6 161 26.7
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 2.3e-06 57.0 231 26.8


User provided reference genes

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