Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 2.3e-111 405.6 208 100.0
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 9.7e-110 400.2 208 98.1
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 94.7
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 94.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 93.3
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 92.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 92.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 92.3
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.3
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.3
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 9.4e-105 383.6 207 93.7
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.2e-104 383.3 206 92.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.2e-104 383.3 206 92.7
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 92.3
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 91.8
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.6e-104 382.9 207 93.2
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 91.8
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 92.8
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.8
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 92.3
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 92.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 91.3
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 6.1e-104 380.9 207 91.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 92.3
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 91.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 90.4
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 90.9
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.8e-103 379.4 208 90.9
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.3e-103 379.0 208 90.9
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.3e-103 379.0 208 90.9
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 5.1e-103 377.9 208 90.9
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 89.9
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 90.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 92.2
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 90.4
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 90.4
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.5e-102 375.6 208 89.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 89.9
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 89.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 4.3e-102 374.8 206 90.8
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.3e-102 374.8 208 89.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 4.3e-102 374.8 210 90.5
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.3e-102 374.8 208 89.9
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 5.7e-102 374.4 206 90.3
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 89.8
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 9.7e-102 373.6 208 90.9
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.3e-101 373.2 207 89.9
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 89.9
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.7e-101 372.9 213 88.7
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 3.7e-101 371.7 208 88.9
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 88.5
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 6.3e-101 370.9 206 89.8
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 88.9
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 88.5
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.4e-100 369.8 218 86.7
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 88.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.8e-100 369.4 206 89.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 88.9
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.1e-100 368.6 206 88.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 4.1e-100 368.2 203 90.6
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 4.1e-100 368.2 206 89.3
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.5
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.6e-99 365.5 209 88.5
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 2.6e-99 365.5 208 87.5
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 88.9
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 3.4e-99 365.2 208 86.1
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 3.4e-99 365.2 206 86.9
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.4e-99 365.2 209 88.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.4e-99 365.2 209 88.0
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.5e-99 364.8 209 88.0
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 87.0
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 205 88.3
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.0e-98 363.6 206 88.3
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.7e-98 362.8 207 86.5
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 85.6
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 86.5
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 5.0e-98 361.3 205 87.8
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 86.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.5e-97 359.0 196 92.3
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 88.9
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 86.5
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 86.5
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 86.5
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.5e-97 357.8 207 89.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.5e-97 357.8 207 89.4
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 86.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 9.4e-97 357.1 208 86.5
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 85.6
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 85.1
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 85.1
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.1e-96 355.9 207 88.9
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 86.1
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 86.1
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 7.9e-96 354.0 208 85.1
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 7.9e-96 354.0 208 87.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.4e-95 353.2 207 87.0
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-94 349.4 207 87.0
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 7.4e-94 347.4 208 81.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 7.4e-94 347.4 208 80.8
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.4e-92 342.4 208 83.2
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.2e-90 335.9 178 92.7
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 2.2e-90 335.9 178 92.7
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.1e-89 333.6 208 83.2
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.6e-88 329.7 178 91.6
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.1e-88 329.3 179 90.5
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 8.8e-87 323.9 206 81.6
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 4.8e-85 318.2 177 87.0
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.4e-84 315.8 208 74.0
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.1e-84 315.5 210 80.5
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 4.1e-84 315.1 208 79.8
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.0e-83 312.8 179 84.9
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 5.9e-83 311.2 190 83.2
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 3.1e-76 288.9 167 84.4
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.0e-75 286.2 205 72.2
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 2.7e-75 285.8 156 91.0
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 5.0e-74 281.6 156 89.7
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.1e-73 280.4 207 72.5
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.3e-69 266.9 232 63.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 5.4e-68 261.5 203 63.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.7e-66 256.5 202 61.9
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.3e-66 256.1 206 66.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.1e-65 253.8 200 60.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 8.0e-64 247.7 198 61.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 6.3e-61 238.0 162 77.2
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 5.6e-57 224.9 196 55.1
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 9.5e-57 224.2 133 88.0
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.6e-56 223.4 120 90.0
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 9.8e-54 214.2 207 55.1
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 5.4e-52 208.4 207 50.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 7.8e-51 204.5 151 72.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.5e-49 200.3 148 70.3
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.5e-49 200.3 197 48.7
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 4.3e-49 198.7 209 55.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.6e-46 189.5 196 45.9
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 6.6e-42 174.9 231 42.0
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.2e-40 170.6 160 61.9
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.8e-40 169.5 208 49.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.0e-39 165.6 98 83.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 6.6e-34 148.3 206 46.6
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 3.6e-32 142.5 187 40.1
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.5e-30 137.1 74 91.9
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 2.0e-30 136.7 95 75.8
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 4.4e-30 135.6 99 71.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.4e-28 130.6 83 78.3
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 6.0e-27 125.2 91 71.4
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.0e-26 124.4 135 54.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 7.3e-25 118.2 60 88.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 2.6e-22 109.8 82 68.3
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.9e-21 106.3 73 75.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 3.5e-19 99.4 60 81.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 1.9e-12 77.0 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 4.3e-09 65.9 62 62.9
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.1e-08 63.5 39 74.4
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 5.3e-07 58.9 38 68.4
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 2.0e-06 57.0 58 62.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 7.6e-06 55.1 137 24.8


User provided reference genes

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