Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.3e-111 406.4 208 100.0
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 9.7e-110 400.2 208 98.1
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 93.8
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.3
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 92.3
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.3
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 92.3
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 91.8
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 92.3
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.1e-104 382.5 207 93.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 91.8
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 92.3
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 92.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.3
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.8
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 3.6e-104 381.7 207 92.8
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 4.6e-104 381.3 207 91.3
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 91.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 91.8
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 7.9e-104 380.6 206 91.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 7.9e-104 380.6 206 91.7
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 90.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 91.3
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 90.9
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 90.9
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 91.8
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-103 379.4 208 90.9
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.3e-103 379.0 208 90.9
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 6.7e-103 377.5 208 90.4
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 6.7e-103 377.5 208 90.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 92.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 89.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 91.3
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 90.4
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 89.9
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 89.9
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.9e-102 375.9 206 90.3
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 89.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 89.9
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 89.9
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 89.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.3e-102 375.2 210 90.5
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 89.4
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.3e-102 374.8 208 88.9
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 5.7e-102 374.4 208 88.9
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 7.4e-102 374.0 208 89.4
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 9.7e-102 373.6 207 89.9
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 9.7e-102 373.6 208 89.4
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 88.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.2e-101 372.5 206 89.8
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 3.7e-101 371.7 206 89.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 89.4
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 89.9
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 8.2e-101 370.5 206 88.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 88.5
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 88.9
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 89.8
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.1e-100 370.2 213 87.8
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 3.1e-100 368.6 206 88.8
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 3.1e-100 368.6 218 86.2
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 88.9
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 4.1e-100 368.2 207 87.9
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 9.1e-100 367.1 207 87.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.0
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.2e-99 366.7 206 86.9
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.6e-99 365.5 203 89.7
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 87.0
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 88.4
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 5.9e-99 364.4 208 87.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 85.6
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.0e-98 363.6 206 87.9
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.7e-98 362.8 205 87.8
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.9e-98 362.1 209 87.1
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.8e-98 361.7 209 86.6
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.8e-98 361.7 209 86.6
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 5.0e-98 361.3 209 86.6
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 87.0
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 87.0
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 86.1
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 8.5e-98 360.5 205 87.3
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 85.1
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 86.1
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 86.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 87.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 86.1
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 86.5
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 86.5
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.2e-96 356.7 207 88.9
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.2e-96 356.7 207 88.9
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 85.6
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 85.1
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.6e-96 356.3 196 91.3
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 88.0
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 84.6
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.7e-96 354.8 207 88.4
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 6.1e-96 354.4 208 87.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.0e-95 353.6 207 87.0
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.8e-95 352.8 208 84.6
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.4e-94 348.2 207 86.5
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.4e-94 348.2 208 81.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.7e-94 347.8 208 80.8
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 4.1e-92 341.7 208 82.7
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.8e-90 335.1 178 92.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.1e-89 333.6 178 91.6
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.5e-89 332.4 208 82.7
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 8.0e-88 327.4 178 90.4
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.0e-87 327.0 179 89.4
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 6.7e-87 324.3 206 81.1
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.7e-85 319.7 208 75.0
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 8.2e-85 317.4 177 86.4
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.1e-84 317.0 210 80.5
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.4e-84 316.6 179 85.5
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 7.0e-84 314.3 208 79.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.6e-83 313.2 190 83.2
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.8e-76 289.7 167 84.4
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 4.1e-76 288.5 205 72.7
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 4.5e-75 285.0 156 90.4
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 8.5e-74 280.8 207 72.0
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 8.5e-74 280.8 156 89.1
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.4e-68 262.7 211 68.2
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.2e-67 260.4 203 62.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 4.5e-67 258.5 202 62.4
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.5e-65 253.4 206 65.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 4.2e-65 251.9 200 59.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.2e-62 243.8 198 59.6
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 3.7e-61 238.8 162 77.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 9.5e-57 224.2 120 90.0
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.8e-56 222.6 196 54.1
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.4e-55 220.3 133 85.7
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 3.7e-53 212.2 207 54.1
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 3.2e-52 209.1 207 50.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-51 206.8 151 73.5
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 8.6e-50 201.1 148 70.3
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 2.5e-49 199.5 197 48.2
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 4.3e-49 198.7 209 55.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.2e-46 190.7 196 45.9
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.9e-42 175.6 231 42.0
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 8.1e-40 167.9 160 60.6
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.3e-39 166.4 208 48.6
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 8.9e-39 164.5 98 82.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 3.9e-34 149.1 206 46.6
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 2.8e-32 142.9 187 40.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.5e-30 137.1 95 75.8
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.5e-30 137.1 74 91.9
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 5.8e-30 135.2 99 70.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.4e-29 131.7 83 79.5
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.0e-26 124.4 135 54.8
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.0e-26 124.4 91 70.3
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 7.3e-25 118.2 60 88.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 2.0e-22 110.2 82 68.3
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.2e-21 106.7 73 75.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 2.1e-19 100.1 60 81.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 1.9e-12 77.0 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 7.4e-09 65.1 62 61.3
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.1e-08 63.5 39 74.4
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 4.0e-07 59.3 38 68.4
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.2e-06 57.8 40 75.0
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 1.5e-06 57.4 137 25.5


User provided reference genes

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