Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1671.8 836 100.0
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1442.2 839 85.5
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1422.5 838 85.1
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1404.8 904 79.0
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1399.8 838 82.7
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1394.0 911 78.2
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1389.4 837 82.2
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1379.8 838 81.3
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1375.9 840 81.4
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1374.0 838 81.4
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1374.0 837 81.0
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1370.1 868 80.1
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1368.2 838 80.4
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1366.3 838 80.9
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1364.0 838 80.3
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1363.2 838 80.4
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1361.3 838 80.2
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1359.0 838 80.4
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1355.1 838 79.8
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1352.0 858 79.7
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 838 80.2
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 838 80.2
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1348.6 840 80.4
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1341.3 826 80.8
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1340.9 839 80.6
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 836 79.2
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1337.4 838 79.1
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1336.6 830 80.2
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1336.6 838 79.5
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 838 80.5
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 838 79.0
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1333.5 836 79.2
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1332.4 838 78.9
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 838 78.8
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 840 79.3
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1329.3 839 78.5
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 838 78.9
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1324.7 838 78.2
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1324.3 838 78.3
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1324.3 839 79.0
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 838 78.5
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1323.1 838 78.5
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 838 78.0
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1322.4 838 78.0
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 837 78.1
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1320.1 839 77.7
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 839 78.8
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1319.3 838 77.7
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1319.3 776 84.8
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1319.3 838 78.0
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1318.5 838 76.7
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 839 78.1
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 843 77.8
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1316.6 838 77.6
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 838 77.3
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 836 77.9
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1311.6 838 77.6
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1310.8 838 78.3
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 838 77.8
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 839 77.0
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1309.7 845 77.3
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 838 77.1
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 838 77.8
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 915 73.6
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 870 76.0
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1307.0 836 77.4
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1306.6 840 77.5
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 845 77.2
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1304.3 845 76.9
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1301.6 858 76.8
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1298.5 850 76.7
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1297.7 967 70.0
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1292.7 841 76.1
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1290.4 846 77.2
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1285.4 838 75.5
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1283.9 911 72.4
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1283.1 838 76.0
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1274.2 843 75.2
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1271.5 838 76.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1248.0 826 75.7
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1246.5 825 76.0
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1243.8 781 78.6
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1240.7 867 73.1
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1238.4 838 74.9
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 764 79.3
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1228.8 842 74.5
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1228.8 767 79.4
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1224.9 751 81.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1212.2 766 78.5
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1202.2 842 73.6
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1192.9 839 73.3
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1189.9 794 75.2
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1182.5 838 72.1
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1158.7 858 68.1
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1150.2 839 68.7
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1132.1 823 67.9
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1129.0 691 81.2
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1122.5 844 66.5
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1122.1 836 69.6
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1120.9 748 73.3
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1095.9 839 67.8
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1087.0 697 77.0
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1081.6 852 64.4
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1076.6 850 64.9
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 4.0e-308 1061.2 839 64.6
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.6e-299 1031.9 653 78.4
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 3.1e-276 955.3 843 62.2
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 8.0e-248 860.9 642 69.9
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.9e-229 799.3 542 73.1
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-223 780.8 418 91.9
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.7e-219 766.1 511 74.4
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 7.0e-159 565.5 329 83.6
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 3.5e-134 483.4 285 84.9
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-132 478.4 300 83.3
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.3e-116 423.7 254 81.5
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 5.4e-103 379.8 278 71.2
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 7.1e-103 379.4 307 63.8
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 6.4e-96 356.3 194 88.1
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.9e-95 354.8 388 53.1
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 2.9e-72 277.7 275 56.0
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 5.9e-65 253.4 182 72.0
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-53 215.3 139 77.7
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 7.2e-47 193.4 140 67.9
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.7e-43 182.2 117 77.8
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 6.3e-35 153.7 83 85.5
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 3.1e-34 151.4 93 82.8
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.0e-29 134.8 103 65.0
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 2.0e-28 132.1 133 54.9
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 2.8e-27 128.3 82 76.8
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.1e-23 116.3 76 72.4
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 1.9e-23 115.5 74 77.0
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 5.6e-23 114.0 84 67.9
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.8e-18 99.0 67 71.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.0e-13 83.2 68 63.2
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 2.0e-12 79.0 105 47.6
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-10 73.2 41 87.8
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.3e-08 66.2 57 61.4
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 8.6e-08 63.5 43 72.1


User provided reference genes

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