Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 2.1e-46 188.7 99 100.0
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 3.1e-42 174.9 99 86.9
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 3.8e-40 167.9 99 81.8
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 9.5e-39 163.3 97 88.7
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 1.2e-38 162.9 97 88.7
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 1.2e-38 162.9 97 88.7
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.2e-38 162.9 99 80.8
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 8.0e-38 160.2 96 83.3
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.0e-37 159.8 96 82.3
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 4.0e-37 157.9 97 77.3
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 4.0e-37 157.9 97 78.4
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 5.2e-37 157.5 99 77.8
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 6.8e-37 157.1 93 78.5
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 1.2e-36 156.4 96 80.2
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.0e-36 155.6 97 77.3
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 3.4e-36 154.8 97 79.4
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.4e-36 154.8 97 77.3
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.4e-36 154.8 97 77.3
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 5.7e-36 154.1 96 77.1
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 5.7e-36 154.1 91 82.4
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 9.8e-36 153.3 92 80.4
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 9.8e-36 153.3 93 80.6
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 1.7e-35 152.5 93 76.3
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.7e-35 152.5 97 76.3
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 2.2e-35 152.1 93 79.6
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 2.8e-35 151.8 94 74.5
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 2.8e-35 151.8 94 75.5
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 2.8e-35 151.8 97 75.3
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 2.8e-35 151.8 97 82.5
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 2.8e-35 151.8 97 75.3
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.7e-35 151.4 97 75.3
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.7e-35 151.4 97 75.3
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 3.7e-35 151.4 97 76.3
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 4.9e-35 151.0 96 75.0
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 4.9e-35 151.0 96 75.0
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 4.9e-35 151.0 96 75.0
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 6.3e-35 150.6 96 75.0
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 6.3e-35 150.6 92 77.2
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 6.3e-35 150.6 92 77.2
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 8.3e-35 150.2 96 75.0
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 8.3e-35 150.2 96 75.0
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 8.3e-35 150.2 96 75.0
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 8.3e-35 150.2 96 75.0
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 1.1e-34 149.8 96 75.0
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 76.3
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.8e-34 149.1 95 75.8
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 81.4
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 79.4
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 3.1e-34 148.3 96 76.0
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 4.1e-34 147.9 95 73.7
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 5.4e-34 147.5 92 76.1
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 5.4e-34 147.5 97 72.2
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 7.0e-34 147.1 95 74.7
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.2e-33 146.4 92 75.0
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.2e-33 146.4 92 75.0
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 1.6e-33 146.0 95 77.9
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.6e-33 146.0 92 76.1
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 1.6e-33 146.0 98 78.6
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 3.5e-33 144.8 95 72.6
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 3.5e-33 144.8 94 76.6
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 3.5e-33 144.8 94 76.6
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 3.5e-33 144.8 94 79.8
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 3.5e-33 144.8 94 79.8
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 4.5e-33 144.4 94 72.3
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 4.5e-33 144.4 95 73.7
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 4.5e-33 144.4 99 75.8
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 7.8e-33 143.7 95 71.6
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 1.0e-32 143.3 94 74.5
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 1.0e-32 143.3 99 74.7
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.3e-32 142.9 92 70.7
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 1.7e-32 142.5 94 78.7
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 2.3e-32 142.1 92 73.9
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 8.6e-32 140.2 99 75.8
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.5e-31 139.4 98 72.4
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 1.9e-31 139.0 96 71.9
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 5.6e-31 137.5 96 75.0
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 5.6e-31 137.5 96 74.0
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 7.3e-31 137.1 96 71.9
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 9.5e-31 136.7 97 66.0
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 8.0e-30 133.7 99 70.7
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 1.0e-29 133.3 97 71.1
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 1.4e-29 132.9 97 69.1
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 3.0e-29 131.7 94 67.0
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 3.0e-29 131.7 98 72.4
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 3.0e-29 131.7 101 66.3
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 4.0e-29 131.3 81 76.5
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 4.0e-29 131.3 95 74.7
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 5.2e-29 131.0 101 67.3
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 8.9e-29 130.2 97 68.0
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 2.6e-28 128.6 94 73.4
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 4.4e-28 127.9 95 72.6
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 1.3e-27 126.3 92 71.7
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 1.3e-27 126.3 94 66.0
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 1.3e-27 126.3 97 64.9
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.3e-27 126.3 94 71.3
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 2.9e-27 125.2 94 67.0
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 2.9e-27 125.2 99 66.7
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 4.1e-26 121.3 100 65.0
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 5.4e-26 120.9 87 69.0
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 2.7e-25 118.6 97 63.9
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 3.5e-25 118.2 87 66.7
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 3.5e-25 118.2 95 65.3
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 6.6e-24 114.0 84 69.0
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 6.6e-24 114.0 84 69.0
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 8.6e-24 113.6 80 68.8
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 8.6e-24 113.6 99 63.6
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 4.3e-23 111.3 69 78.3
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 1.2e-22 109.8 92 57.6
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 2.1e-22 109.0 94 61.7
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 3.6e-22 108.2 88 60.2
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 4.7e-22 107.8 92 55.4
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 1.1e-21 106.7 101 58.4
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 5.2e-21 104.4 92 55.4
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 6.8e-21 104.0 65 75.4
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.9e-19 98.6 97 59.8
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 8.3e-19 97.1 93 58.1
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 1.4e-18 96.3 94 58.5
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.6e-17 92.8 89 51.7
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.7e-17 92.0 89 52.8
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.0e-16 90.1 91 49.5
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.1e-15 86.7 97 52.6
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.4e-13 79.7 97 53.6
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 3.7e-11 71.6 112 41.1
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 4.9e-11 71.2 40 75.0
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 6.4e-11 70.9 100 50.0
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 1.4e-10 69.7 111 39.6
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 4.1e-10 68.2 112 40.2
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 9.2e-10 67.0 57 61.4
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 2.1e-06 55.8 50 50.0
Oeu016235.1 Olea europaea HOM05D006087 ORTHO05D007479 4.7e-06 54.7 43 69.8


User provided reference genes

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