Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 2.8e-109 398.7 205 100.0
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.9e-97 359.4 205 90.7
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 4.1e-97 358.2 205 90.7
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 7.6e-91 337.4 206 86.4
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.5e-86 322.4 206 84.5
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 2.1e-85 319.3 205 84.4
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 4.5e-83 311.6 210 81.0
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.7e-82 309.7 229 76.4
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.9e-82 308.9 228 76.3
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 3.8e-82 308.5 208 80.8
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.4e-81 306.6 209 78.9
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 2.1e-80 302.8 209 79.4
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 7.4e-78 294.3 258 66.3
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 1.3e-77 293.5 212 75.9
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 2.8e-77 292.4 209 76.6
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 3.1e-76 288.9 188 83.5
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 4.0e-76 288.5 206 77.7
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 4.5e-75 285.0 212 74.1
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.3e-74 283.5 211 75.4
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.3e-74 283.5 211 75.4
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 1.3e-74 283.5 218 74.8
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 2.9e-74 282.3 224 70.5
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 2.9e-74 282.3 217 72.8
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 6.4e-74 281.2 214 75.2
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 9.3e-73 277.3 209 74.2
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 9.3e-73 277.3 209 74.6
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.2e-72 276.9 214 73.8
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.6e-72 276.6 214 74.3
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.5e-72 275.4 214 74.3
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 2.5e-70 269.2 207 72.9
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 2.5e-70 269.2 207 72.9
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 5.6e-70 268.1 203 72.4
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 9.6e-70 267.3 187 75.9
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 2.8e-69 265.8 208 69.7
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 3.7e-69 265.4 215 69.8
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 4.8e-69 265.0 213 70.0
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 4.8e-69 265.0 225 68.9
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 6.2e-69 264.6 211 72.5
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 1.8e-68 263.1 210 69.0
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 1.8e-68 263.1 211 69.7
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.5e-67 260.0 207 69.1
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 2.6e-67 259.2 213 69.0
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 3.4e-67 258.8 207 68.1
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 4.5e-67 258.5 223 66.4
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 4.5e-67 258.5 207 68.6
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 1.0e-66 257.3 251 63.3
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 1.3e-66 256.9 162 82.1
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 2.9e-66 255.8 213 69.5
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 3.8e-66 255.4 196 73.5
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 4.9e-66 255.0 217 66.4
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 8.4e-66 254.2 207 68.6
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 1.1e-65 253.8 212 68.9
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 1.4e-65 253.4 214 66.8
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 1.4e-65 253.4 149 85.9
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.9e-65 253.1 210 68.6
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 4.2e-65 251.9 210 68.1
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.2e-64 250.4 221 68.3
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.6e-64 250.0 219 65.3
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 1.6e-64 250.0 229 64.2
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.1e-64 249.6 223 67.7
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 2.1e-64 249.6 215 67.4
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 2.7e-64 249.2 207 68.1
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 2.7e-64 249.2 205 68.3
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 4.6e-64 248.4 215 64.2
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.6e-64 248.4 220 67.3
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 4.6e-64 248.4 214 65.4
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 4.6e-64 248.4 208 68.3
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 1.3e-63 246.9 278 55.4
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 1.8e-63 246.5 206 68.4
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 1.8e-63 246.5 225 65.8
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 6.7e-63 244.6 215 66.0
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.5e-62 243.4 233 62.2
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.5e-62 242.7 215 64.7
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 5.7e-62 241.5 211 63.5
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 7.4e-62 241.1 215 62.8
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.3e-61 240.4 195 70.8
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 8.2e-61 237.7 162 75.9
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 3.1e-60 235.7 212 62.7
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 4.1e-60 235.3 222 62.6
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 4.1e-60 235.3 150 80.7
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 5.3e-60 235.0 212 63.2
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 1.2e-59 233.8 211 62.6
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 1.5e-59 233.4 212 62.7
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 3.4e-59 232.3 212 62.7
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 3.4e-59 232.3 212 62.7
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.0e-58 230.7 210 61.9
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.0e-58 230.7 212 62.3
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 1.0e-58 230.7 210 61.9
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 1.3e-58 230.3 213 62.4
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 2.2e-58 229.6 209 61.7
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 2.9e-58 229.2 212 61.8
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 2.9e-58 229.2 211 62.6
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 2.9e-58 229.2 210 61.0
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.9e-58 229.2 130 87.7
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.8e-58 228.8 182 69.8
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 6.5e-58 228.0 163 71.8
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.1e-57 227.3 161 77.6
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 1.1e-57 227.3 210 61.9
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 1.9e-57 226.5 207 61.4
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 3.2e-57 225.7 201 67.2
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 7.2e-57 224.6 206 63.6
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 9.3e-57 224.2 194 64.4
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 2.1e-56 223.0 207 60.4
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 2.7e-56 222.6 191 64.9
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 6.1e-56 221.5 282 49.3
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 6.7e-55 218.0 191 68.6
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 3.3e-54 215.7 207 64.3
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 4.3e-54 215.3 217 60.4
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 1.3e-53 213.8 120 88.3
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 3.7e-53 212.2 197 62.4
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.2e-51 207.2 202 59.4
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.0e-51 206.5 150 70.0
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 2.6e-51 206.1 150 71.3
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 3.4e-51 205.7 206 56.8
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 4.5e-51 205.3 134 72.4
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 1.7e-50 203.4 176 64.2
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.1e-49 200.7 224 54.9
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 7.2e-49 198.0 208 51.4
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.2e-48 197.2 196 59.2
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 2.1e-48 196.4 193 59.1
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 4.6e-48 195.3 192 58.9
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 7.9e-48 194.5 170 65.9
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.8e-47 193.4 206 57.8
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.0e-47 192.6 202 53.5
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 1.7e-45 186.8 191 61.3
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 8.2e-45 184.5 168 63.7
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.1e-44 184.1 199 53.8
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 1.8e-44 183.3 207 55.1
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 7.7e-43 177.9 153 62.7
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.1e-41 174.1 165 60.6
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.4e-41 173.7 159 61.0
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.9e-41 173.3 133 65.4
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 7.2e-41 171.4 162 60.5
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 9.4e-41 171.0 137 67.2
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 4.7e-40 168.7 148 65.5
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.8e-39 166.8 161 62.7
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 3.0e-39 166.0 207 51.2
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 5.2e-39 165.2 103 81.6
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 5.2e-39 165.2 130 67.7
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 8.8e-39 164.5 146 62.3
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.3e-38 162.5 159 62.9
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 2.2e-37 159.8 193 53.4
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 3.1e-36 156.0 133 57.9
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 1.7e-29 133.7 194 44.3
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 3.2e-25 119.4 132 47.0
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 1.7e-21 107.1 62 90.3
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 5.9e-19 98.6 86 65.1
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 4.2e-17 92.4 88 55.7
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 2.1e-16 90.1 146 39.7
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 6.8e-15 85.1 116 38.8
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 1.7e-10 70.5 51 64.7
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 9.5e-09 64.7 35 94.3
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 1.2e-08 64.3 100 46.0
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 6.1e-08 62.0 39 71.8


User provided reference genes

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