Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.4e-80 302.8 135 100.0
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 7.5e-71 270.4 135 85.9
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.7e-67 259.2 135 83.7
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 6.6e-67 257.3 135 84.4
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 8.6e-67 256.9 135 83.0
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.1e-66 256.5 135 83.7
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 5.2e-64 247.7 135 79.3
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.0e-63 245.7 135 79.3
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 7.5e-63 243.8 135 78.5
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 9.8e-63 243.4 135 79.3
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 2.2e-62 242.3 135 77.0
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 3.7e-62 241.5 134 78.4
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 2.4e-61 238.8 135 80.0
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 4.1e-61 238.0 135 77.8
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 7.0e-61 237.3 135 77.0
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 7.0e-61 237.3 135 76.3
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 9.2e-61 236.9 135 78.5
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.6e-60 236.1 147 72.1
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.0e-60 235.7 148 72.3
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.7e-60 235.3 147 72.8
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 75.6
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.7e-59 232.6 150 71.3
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 75.6
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 5.0e-59 231.1 135 75.6
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 6.6e-59 230.7 152 68.4
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 73.3
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.1e-58 229.9 135 73.3
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.1e-58 229.9 135 74.1
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.9e-58 229.2 135 74.8
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 73.3
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 3.3e-58 228.4 135 75.6
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 4.3e-58 228.0 136 73.5
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 5.6e-58 227.6 153 68.6
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 5.6e-58 227.6 135 73.3
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 7.3e-58 227.3 136 73.5
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 7.3e-58 227.3 136 73.5
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 9.5e-58 226.9 145 70.3
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 9.5e-58 226.9 146 67.8
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 9.5e-58 226.9 148 70.3
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-57 226.5 135 72.6
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.2e-57 226.5 135 72.6
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 1.2e-57 226.5 130 73.8
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 1.2e-57 226.5 159 64.8
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.6e-57 226.1 148 68.9
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 2.1e-57 225.7 135 73.3
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.8e-57 225.3 135 72.6
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.8e-57 225.3 130 76.2
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 3.6e-57 224.9 135 72.6
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 3.6e-57 224.9 135 72.6
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 3.6e-57 224.9 132 76.5
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 4.7e-57 224.6 123 79.7
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 6.2e-57 224.2 135 72.6
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 71.9
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.0e-56 223.4 135 71.9
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 1.0e-56 223.4 153 65.4
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 2.3e-56 222.2 135 71.1
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 2.3e-56 222.2 135 71.9
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.3e-56 222.2 153 67.3
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 137 72.3
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 137 72.3
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.1e-56 221.9 137 72.3
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.1e-56 221.9 145 67.6
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 153 65.4
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 3.1e-56 221.9 153 65.4
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 71.1
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 5.2e-56 221.1 135 71.9
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 6.8e-56 220.7 150 66.0
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 8.9e-56 220.3 149 67.1
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.2e-55 219.9 130 73.1
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.0e-55 219.2 144 65.3
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.0e-55 219.2 159 62.9
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 2.6e-55 218.8 144 70.1
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.8e-55 217.6 133 73.7
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 7.5e-55 217.2 130 73.1
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 7.5e-55 217.2 133 73.7
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 9.8e-55 216.9 144 64.6
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 9.8e-55 216.9 129 74.4
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 9.8e-55 216.9 133 73.7
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.3e-54 216.5 133 72.2
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.3e-54 216.5 127 71.7
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.7e-54 216.1 150 65.3
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.2e-54 215.7 150 64.0
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.2e-54 215.7 135 71.9
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 3.7e-54 214.9 122 78.7
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 8.3e-54 213.8 130 72.3
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 8.3e-54 213.8 148 65.5
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.1e-53 213.4 136 71.3
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.1e-53 211.5 126 73.0
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 7.0e-53 210.7 142 67.6
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 9.2e-53 210.3 123 73.2
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 9.2e-53 210.3 158 62.0
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 7.8e-52 207.2 122 73.0
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 7.8e-52 207.2 138 69.6
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.0e-51 206.8 123 70.7
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 1.0e-51 206.8 123 69.9
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.0e-51 206.8 145 62.8
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 3.0e-51 205.3 154 60.4
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 3.0e-51 205.3 154 60.4
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 7.3e-50 200.7 133 66.2
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 2.8e-49 198.7 112 75.9
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.8e-48 196.1 130 68.5
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.8e-48 196.1 113 74.3
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.8e-48 196.1 113 74.3
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 2.0e-47 192.6 130 66.9
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 5.8e-47 191.0 150 58.7
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 1.3e-46 189.9 143 58.7
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.7e-46 189.5 128 66.4
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 6.4e-46 187.6 154 59.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 6.0e-44 181.0 159 54.7
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 6.6e-43 177.6 123 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.4e-40 169.9 117 60.7
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 6.8e-40 167.5 105 70.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 3.4e-39 165.2 136 55.1
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 5.8e-39 164.5 173 47.4
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.6e-36 156.4 126 53.2
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 6.0e-36 154.5 127 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.5e-34 149.1 147 49.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 3.8e-30 135.2 87 69.0
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 6.6e-27 124.4 72 73.6
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 9.9e-23 110.5 59 78.0
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 8.4e-22 107.5 58 74.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 6.2e-17 91.3 74 55.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.8e-16 89.7 54 68.5
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.4e-16 89.4 81 54.3
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 3.1e-16 89.0 105 44.8
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 6.9e-16 87.8 115 41.7
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 3.4e-15 85.5 80 52.5
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.5e-15 85.1 80 52.5
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.4e-13 80.1 97 43.3
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 7.1e-13 77.8 79 49.4
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 9.3e-13 77.4 75 53.3
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.0e-11 73.9 43 69.8
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 1.5e-10 70.1 94 39.4
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 2.5e-10 69.3 102 36.3
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 7.4e-10 67.8 49 55.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.6e-09 66.6 53 52.8
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.7e-09 65.5 50 56.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.7e-09 65.5 50 56.0
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.8e-08 63.2 53 50.9
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 4.0e-08 62.0 53 52.8
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 7.6e-07 57.8 49 55.1


User provided reference genes

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