Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.6e-171 605.9 295 100.0
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.2e-132 476.9 301 80.1
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 7.2e-127 457.6 303 76.6
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.6e-124 449.1 301 76.7
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 2.3e-120 436.0 300 74.3
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.9e-111 406.4 317 66.2
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 3.6e-110 402.1 295 65.8
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.6e-110 402.1 295 66.4
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 2.3e-109 399.4 297 64.6
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 4.0e-109 398.7 295 65.4
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 6.8e-109 397.9 295 66.1
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.5e-108 396.7 289 67.5
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 3.4e-108 395.6 294 66.0
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 3.4e-108 395.6 299 66.6
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.4e-108 395.2 294 67.0
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 3.7e-107 392.1 296 67.2
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 8.3e-107 391.0 294 66.7
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 2.7e-105 386.0 295 63.7
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 9.5e-103 377.5 303 62.4
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.1e-101 374.0 289 65.1
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 8.9e-101 370.9 299 61.5
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.5e-100 370.2 287 63.8
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 2.6e-100 369.4 288 63.2
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.3e-99 367.1 283 63.6
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.2e-99 366.3 283 63.3
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 2.9e-99 365.9 296 64.5
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 6.4e-99 364.8 294 64.3
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 6.4e-99 364.8 292 63.0
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 6.4e-99 364.8 291 61.9
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.1e-98 364.0 283 63.6
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 2.4e-98 362.8 295 62.7
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.4e-98 362.8 290 60.0
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 5.4e-98 361.7 283 62.2
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 7.0e-98 361.3 283 61.5
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 7.0e-98 361.3 295 63.1
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 9.2e-98 360.9 298 59.1
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.6e-97 360.1 283 63.3
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.0e-96 357.5 283 62.2
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 6.6e-96 354.8 304 60.2
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.1e-95 354.0 292 60.3
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.5e-95 353.6 286 60.8
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.9e-95 353.2 300 60.7
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.3e-95 352.1 291 60.5
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 7.3e-95 351.3 295 62.7
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 4.7e-94 348.6 283 60.8
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.4e-93 347.1 296 61.1
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.8e-93 346.7 301 58.5
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 2.3e-93 346.3 290 61.4
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 3.1e-93 345.9 288 60.8
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 5.2e-93 345.1 294 60.9
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 1.5e-92 343.6 285 62.1
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 4.4e-92 342.0 288 61.1
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 5.8e-92 341.7 300 60.3
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 7.5e-92 341.3 292 58.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 7.5e-92 341.3 303 59.7
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 7.5e-92 341.3 288 61.5
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.3e-91 340.5 291 60.8
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 3.7e-91 339.0 288 60.4
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 3.7e-91 339.0 300 61.0
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 3.7e-91 339.0 297 58.2
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 4.9e-91 338.6 301 58.5
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 8.3e-91 337.8 298 58.4
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.4e-90 337.0 269 64.3
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 2.4e-90 336.3 305 57.4
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 5.4e-90 335.1 291 58.1
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.2e-89 334.0 317 56.8
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 2.7e-89 332.8 288 59.7
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.1e-87 327.4 287 59.6
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 9.5e-87 324.3 285 57.5
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 2.8e-86 322.8 278 57.2
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 6.2e-86 321.6 265 61.9
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 8.9e-85 317.8 287 58.2
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.3e-83 313.9 274 59.5
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 2.2e-83 313.2 293 55.6
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 3.8e-83 312.4 293 56.0
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 3.2e-82 309.3 275 60.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 7.1e-82 308.1 217 67.3
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 6.0e-81 305.1 292 56.5
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.3e-80 303.9 256 64.8
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.3e-80 303.1 293 56.0
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.1e-79 300.8 293 54.6
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.2e-78 297.4 280 57.9
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 9.9e-76 287.7 174 78.2
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 2.9e-75 286.2 286 52.4
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 3.8e-75 285.8 318 52.5
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 6.4e-75 285.0 345 47.5
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.7e-72 276.9 289 50.9
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.4e-69 267.3 289 51.9
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 4.2e-66 255.8 282 53.2
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 3.5e-65 252.7 173 68.8
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.3e-64 250.8 175 66.9
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.8e-64 250.4 297 47.1
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 3.0e-64 249.6 288 49.0
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 6.7e-64 248.4 275 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.4e-58 230.7 304 44.1
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.5e-58 229.9 296 43.2
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 2.5e-58 229.9 151 74.8
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.6e-57 225.7 335 43.9
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 2.4e-53 213.4 273 44.0
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 5.3e-53 212.2 329 41.6
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.4e-52 209.5 160 61.9
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.3e-51 207.6 295 43.4
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.7e-51 207.2 335 42.1
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 1.7e-51 207.2 285 45.6
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 6.5e-51 205.3 283 43.8
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.2e-49 201.1 118 78.8
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.2e-49 201.1 118 78.8
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.8e-48 197.2 301 42.9
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 6.7e-48 195.3 325 40.3
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 8.7e-48 194.9 276 41.3
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 8.7e-48 194.9 286 39.9
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 4.3e-47 192.6 268 43.7
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 6.3e-46 188.7 214 50.9
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.8e-45 187.2 170 57.1
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 6.5e-43 178.7 102 83.3
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.6e-41 174.1 155 54.8
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 2.1e-41 173.7 291 38.5
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 6.1e-41 172.2 189 49.7
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 2.3e-40 170.2 207 47.3
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 1.5e-39 167.5 98 77.6
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.5e-36 157.5 118 63.6
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 3.8e-35 152.9 286 36.0
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 5.0e-35 152.5 95 75.8
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 7.9e-33 145.2 163 50.3
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-32 144.1 209 40.7
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 5.1e-32 142.5 122 60.7
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.9e-26 124.0 140 46.4
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.2e-26 122.9 102 59.8
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.2e-26 122.9 140 46.4
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 3.9e-24 116.3 199 38.7
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.7e-17 93.6 50 86.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.4e-16 91.3 52 80.8
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.3e-11 74.7 101 42.6
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 2.9e-11 73.6 50 66.0
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.0e-08 63.5 71 47.9
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.5e-07 61.2 101 38.6
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 2.6e-07 60.5 94 39.4
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 3.4e-07 60.1 71 46.5


User provided reference genes

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