Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.7e-216 755.7 388 100.0
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 4.0e-117 425.6 389 63.5
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 2.5e-103 379.8 392 60.7
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.6e-100 368.2 397 59.4
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.4e-99 364.8 397 59.7
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 3.2e-98 362.8 435 52.2
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.4e-93 347.4 396 57.3
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 3.1e-93 346.3 440 49.8
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 6.9e-93 345.1 435 50.3
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-92 343.6 396 56.8
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 6.9e-85 318.5 545 41.1
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 6.4e-83 312.0 437 48.7
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 4.2e-82 309.3 451 46.6
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.3e-80 303.5 447 46.8
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 3.3e-79 299.7 438 45.4
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.1e-77 294.7 422 46.4
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.1e-77 294.7 430 45.3
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 5.3e-77 292.4 439 46.7
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 5.8e-76 288.9 434 47.0
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.7e-75 287.3 434 44.5
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.9e-75 285.8 437 45.1
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 5.5e-74 282.3 439 41.7
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.5e-73 279.6 431 44.5
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 4.6e-73 279.3 453 43.7
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.9e-71 273.9 459 42.5
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.4e-69 267.7 430 42.3
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 9.0e-69 265.0 439 42.4
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 3.4e-68 263.1 442 42.5
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.9e-67 260.0 429 40.3
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.8e-67 259.6 442 42.5
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 7.9e-65 251.9 452 40.3
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.5e-63 247.7 372 43.3
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.3e-62 244.6 446 39.2
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.9e-59 233.4 448 37.5
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 3.8e-59 233.0 425 40.5
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 9.4e-58 228.4 442 38.9
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 1.8e-56 224.2 453 36.4
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 3.0e-56 223.4 430 38.6
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.5e-55 221.1 444 35.8
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.0e-55 220.7 437 37.1
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.6e-55 220.3 442 38.0
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.7e-54 217.6 449 38.3
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.2e-54 217.2 440 37.3
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 3.7e-54 216.5 414 41.1
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 4.8e-54 216.1 451 37.7
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 4.1e-53 213.0 450 35.3
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.0e-53 212.2 403 38.5
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.5e-52 211.1 455 36.9
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.6e-52 210.3 436 37.6
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 5.9e-52 209.1 453 36.6
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 7.7e-52 208.8 444 36.3
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.3e-51 208.0 428 36.4
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.2e-51 207.2 445 34.4
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 6.5e-51 205.7 441 35.4
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 6.5e-51 205.7 448 34.4
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 1.1e-50 204.9 441 35.8
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.5e-50 204.5 432 36.3
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 3.2e-50 203.4 445 36.2
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 4.2e-50 203.0 421 38.2
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 5.5e-50 202.6 433 35.6
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.2e-49 201.4 447 34.0
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.2e-49 201.4 412 38.1
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.6e-49 201.1 447 36.7
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.6e-49 201.1 447 36.9
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.8e-48 197.6 394 39.3
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 3.0e-48 196.8 444 34.7
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 3.0e-48 196.8 454 37.2
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 3.9e-48 196.4 454 34.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.1e-47 194.9 424 36.1
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.1e-47 194.9 438 35.8
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.3e-47 193.4 441 34.5
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 3.3e-47 193.4 329 41.0
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 5.7e-47 192.6 445 33.0
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 7.4e-47 192.2 387 39.3
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 9.7e-47 191.8 428 37.4
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.7e-46 191.0 415 37.1
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 3.7e-46 189.9 444 32.9
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 3.7e-46 189.9 455 33.4
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 6.3e-46 189.1 449 34.3
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.1e-45 188.3 448 36.8
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.8e-45 187.6 430 35.6
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.4e-45 187.2 452 34.3
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.4e-45 187.2 419 35.3
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 4.1e-45 186.4 441 35.1
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 7.0e-45 185.7 439 35.3
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 7.0e-45 185.7 420 36.2
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.0e-45 185.7 449 34.1
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.6e-44 184.5 434 34.3
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.0e-44 184.1 429 35.0
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 2.0e-44 184.1 398 39.2
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 2.0e-44 184.1 421 34.9
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.0e-44 184.1 438 34.9
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.0e-44 184.1 422 37.0
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 3.5e-44 183.3 488 32.4
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.0e-43 181.8 431 35.3
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.3e-43 181.4 427 36.3
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 1.7e-43 181.0 441 34.5
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 3.8e-43 179.9 469 33.0
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.9e-42 177.6 415 34.7
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 2.5e-42 177.2 415 34.2
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.2e-42 176.8 434 32.3
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 5.5e-42 176.0 435 31.5
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-41 174.9 351 40.7
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-41 174.5 435 32.0
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.7e-41 173.7 329 39.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.6e-41 173.3 334 39.5
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.8e-40 171.0 427 35.4
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 2.3e-40 170.6 490 31.4
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 4.0e-40 169.9 417 34.3
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.2e-39 168.3 424 35.1
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.2e-39 168.3 439 34.2
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.5e-39 167.9 421 35.6
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.5e-39 167.9 405 35.8
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 2.0e-39 167.5 352 38.4
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 2.0e-39 167.5 351 37.9
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.4e-39 166.8 433 36.7
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 4.4e-39 166.4 434 36.4
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 5.7e-39 166.0 458 31.9
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.7e-38 164.5 429 34.7
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 2.8e-38 163.7 428 34.3
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.8e-38 163.7 435 31.0
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 3.7e-38 163.3 410 33.9
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 3.7e-38 163.3 462 31.2
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.4e-37 161.4 482 31.1
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.4e-37 161.4 439 33.5
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.8e-37 161.0 428 33.9
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 5.4e-37 159.5 410 33.9
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.2e-36 158.3 280 39.6
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.6e-36 157.9 371 35.8
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 3.5e-36 156.8 438 32.9
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 7.7e-36 155.6 437 33.6
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 7.7e-36 155.6 434 30.4
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 1.3e-35 154.8 429 31.9
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.2e-35 154.1 423 34.3
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.8e-35 153.3 467 29.8
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 8.5e-35 152.1 450 31.6
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.5e-34 151.4 401 34.4
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.9e-34 151.0 475 30.5
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 2.5e-34 150.6 419 34.8
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 9.4e-34 148.7 435 33.3
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.2e-33 148.3 318 34.9
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 4.7e-33 146.4 431 32.9
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.0e-32 145.2 312 36.2
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 5.2e-32 142.9 438 32.4
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 5.2e-32 142.9 257 41.2
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.2e-31 141.7 433 32.8
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.0e-31 141.0 440 32.3
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 2.6e-31 140.6 442 31.0
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 5.7e-31 139.4 428 32.7
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.3e-30 138.3 433 32.6
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.7e-30 137.9 453 27.8
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.7e-30 136.7 444 32.2
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 4.1e-29 133.3 440 31.4
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 4.1e-29 133.3 440 29.1
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 2.0e-28 131.0 320 38.1
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 1.1e-26 125.2 452 26.5
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 5.5e-26 122.9 407 31.7
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 5.5e-26 122.9 429 30.5
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.1e-25 120.9 264 37.9
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 4.4e-23 113.2 433 28.2
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 4.4e-23 113.2 169 44.4
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 6.3e-22 109.4 391 29.7
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 7.0e-21 105.9 179 40.8
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 9.5e-18 95.5 466 27.5
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 2.8e-17 94.0 280 31.8
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 6.1e-17 92.8 252 32.5
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 2.3e-16 90.9 179 38.5
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 2.3e-16 90.9 385 27.8
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 5.2e-16 89.7 171 40.4
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 8.9e-16 89.0 299 32.1
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 3.2e-13 80.5 189 34.4
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.6e-12 78.2 363 25.6
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 7.3e-10 69.3 221 31.2
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 9.5e-10 68.9 231 29.0
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 2.1e-09 67.8 118 38.1
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 2.1e-09 67.8 120 38.3
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.8e-09 67.4 80 51.2
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 1.8e-08 64.7 207 30.9
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.1e-08 63.9 190 32.1
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 3.1e-08 63.9 424 25.9
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 2.6e-07 60.8 68 50.0
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.4e-07 60.5 362 23.2
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 4.4e-07 60.1 68 50.0
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 2.9e-06 57.4 371 22.6
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 3.7e-06 57.0 75 46.7
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.9e-06 56.6 158 29.1
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 8.3e-06 55.8 68 45.6


User provided reference genes

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