Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 5.1e-105 384.4 192 100.0
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 3.8e-92 341.7 197 87.8
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 8.4e-76 287.3 197 73.1
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 6.2e-71 271.2 202 69.8
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 1.4e-70 270.0 201 69.2
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.8e-70 269.6 195 68.7
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.5e-67 259.2 195 67.2
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 4.2e-67 258.5 195 66.7
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 3.5e-66 255.4 201 65.2
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 3.5e-66 255.4 201 65.2
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.8e-62 243.0 197 64.5
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 5.9e-61 238.0 197 61.4
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.2e-60 236.1 195 60.0
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 3.8e-60 235.3 201 59.7
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 8.5e-60 234.2 197 62.4
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.9e-59 233.0 198 61.6
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.7e-58 229.2 202 60.4
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 1.0e-57 227.3 201 58.7
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.8e-57 226.5 203 60.1
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.8e-57 226.5 203 57.1
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.8e-57 226.5 203 57.1
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 3.9e-57 225.3 196 58.2
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.1e-56 223.8 197 57.9
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.9e-56 223.0 186 65.1
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 2.5e-56 222.6 199 58.3
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 5.7e-56 221.5 200 57.0
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 7.4e-56 221.1 201 60.2
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 8.2e-55 217.6 185 60.5
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 4.1e-54 215.3 185 60.5
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.6e-53 212.6 157 66.9
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 1.7e-52 209.9 186 59.1
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 5.0e-52 208.4 197 56.9
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.9e-51 206.5 193 56.5
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.9e-51 206.5 197 53.8
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 2.1e-50 203.0 198 55.1
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 2.1e-50 203.0 197 54.8
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 2.7e-50 202.6 203 55.7
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 3.6e-50 202.2 195 55.9
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 4.7e-50 201.8 202 54.0
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 6.1e-50 201.4 198 54.5
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.4e-49 200.3 197 52.3
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.4e-49 200.3 204 55.9
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.8e-49 199.9 204 54.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 3.9e-49 198.7 195 55.9
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 5.1e-49 198.4 198 54.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 8.8e-49 197.6 195 52.8
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 1.1e-48 197.2 200 53.5
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 2.0e-48 196.4 203 53.2
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 4.4e-48 195.3 198 53.5
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.3e-47 193.7 200 53.5
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.7e-47 192.2 196 52.6
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 4.8e-47 191.8 171 57.3
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.1e-46 190.7 200 55.5
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 1.1e-46 190.7 198 51.5
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 3.1e-46 189.1 200 52.5
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 5.3e-46 188.3 192 52.1
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 7.0e-46 188.0 194 54.1
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 7.0e-46 188.0 200 51.5
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 7.0e-46 188.0 198 51.0
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.5e-45 186.8 194 51.0
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 2.0e-45 186.4 178 55.1
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 5.9e-45 184.9 194 50.0
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.0e-44 184.1 193 49.7
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.3e-44 183.7 199 50.3
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 2.2e-44 183.0 197 51.3
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 5.0e-44 181.8 190 50.5
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 5.0e-44 181.8 198 50.0
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 6.5e-44 181.4 204 52.0
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.1e-43 180.6 198 53.0
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.9e-43 179.9 135 65.2
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 4.2e-43 178.7 195 50.3
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 4.2e-43 178.7 194 48.5
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 9.4e-43 177.6 198 52.0
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.6e-42 176.8 185 49.7
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.6e-42 176.8 185 49.7
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 2.1e-42 176.4 196 47.4
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 2.1e-42 176.4 194 48.5
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.6e-42 175.6 194 49.0
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 6.1e-42 174.9 193 48.2
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 6.1e-42 174.9 198 48.5
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.0e-41 174.1 202 45.5
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 6.7e-41 171.4 186 51.6
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 8.8e-41 171.0 216 45.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.5e-40 170.2 186 47.3
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 3.3e-40 169.1 165 53.3
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 3.3e-40 169.1 184 50.0
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 9.7e-40 167.5 180 50.0
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 1.1e-38 164.1 174 51.1
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 2.4e-38 162.9 186 48.9
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.2e-37 160.6 177 48.6
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.0e-37 159.8 186 45.7
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 5.9e-37 158.3 171 52.0
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 4.2e-35 152.1 164 47.0
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.1e-34 149.8 180 43.3
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 3.6e-34 149.1 178 45.5
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.0e-33 147.5 194 44.3
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 2.6e-32 142.9 163 46.6
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 7.5e-32 141.4 192 43.2
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.4e-30 136.3 210 44.8
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.2e-28 129.8 170 44.1
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 6.5e-28 128.3 187 41.2
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 8.5e-28 127.9 203 39.9
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.7e-23 113.6 162 40.7
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 3.7e-23 112.5 177 38.4
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 3.7e-23 112.5 193 38.3
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 8.3e-23 111.3 186 38.7
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.6e-21 107.1 157 40.8
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.8e-17 93.6 93 53.8
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.8e-17 93.6 129 44.2
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.3e-15 87.4 82 57.3
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 1.7e-15 87.0 115 40.9
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 4.9e-15 85.5 102 44.1
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.3e-15 85.1 151 36.4
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.3e-15 84.7 148 36.5
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.3e-15 84.7 148 36.5
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-14 84.0 90 50.0
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 5.0e-12 75.5 196 30.6
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 6.6e-12 75.1 196 31.1
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 1.1e-11 74.3 145 35.9
VMungo0720G0209 Vigna mungo HOM05D005448 ORTHO05D006405 1.6e-10 70.5 90 43.3
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 4.7e-10 68.9 92 43.5
VMungo1309G2642 Vigna mungo HOM05D005448 ORTHO05D006405 4.7e-10 68.9 81 46.9
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.3e-09 66.6 96 43.8
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.2e-08 64.3 72 45.8
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.8e-08 62.0 62 53.2
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 7.5e-08 61.6 68 45.6
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 7.5e-08 61.6 68 45.6
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.3e-07 60.8 48 66.7
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 1.3e-07 60.8 72 44.4
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 2.4e-06 56.6 167 25.1
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 2.4e-06 56.6 82 43.9


User provided reference genes

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