Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.2e-98 363.2 197 100.0
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 8.7e-68 260.8 200 74.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.3e-67 258.8 203 74.4
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 9.9e-64 247.3 192 70.8
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 9.3e-62 240.7 195 69.2
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 9.3e-62 240.7 195 70.3
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.7e-61 239.2 195 69.7
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.3e-52 210.3 197 63.5
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.8e-50 201.8 198 61.1
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.4e-49 199.5 198 62.1
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 6.9e-49 198.0 202 60.4
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.5e-48 196.8 197 58.4
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 4.5e-48 195.3 197 60.4
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 5.8e-48 194.9 201 58.2
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.9e-47 192.6 202 56.9
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.9e-47 192.6 199 58.8
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.2e-46 189.1 200 58.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 5.5e-46 188.3 209 58.4
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.0e-44 182.6 196 57.1
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 5.1e-44 181.8 192 56.8
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.1e-43 180.6 197 53.8
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.3e-43 179.1 198 55.6
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.3e-43 178.7 196 59.2
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 7.4e-43 177.9 195 54.9
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.4e-43 177.9 198 56.6
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.6e-42 176.8 195 54.9
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.6e-42 176.8 202 56.9
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.7e-42 175.6 202 54.5
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 8.2e-42 174.5 200 55.0
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 8.2e-42 174.5 212 52.8
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.1e-41 174.1 216 51.4
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.1e-41 174.1 194 55.2
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.1e-41 174.1 199 55.8
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-41 173.7 192 53.1
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-41 173.3 194 54.1
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-41 172.9 194 54.1
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-41 172.9 194 54.1
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.4e-41 172.9 194 54.1
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 2.4e-41 172.9 201 58.2
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.9e-41 171.4 199 52.8
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-40 170.2 194 52.6
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.5e-40 170.2 194 52.6
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 2.6e-40 169.5 195 51.8
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 4.5e-40 168.7 192 53.6
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.7e-39 166.8 202 53.0
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 3.8e-39 165.6 216 48.6
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 3.8e-39 165.6 201 51.2
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 5.0e-39 165.2 192 52.6
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 8.4e-39 164.5 214 54.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.9e-38 163.3 194 51.5
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.9e-38 163.3 198 52.5
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-38 162.2 198 52.5
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.1e-38 161.4 195 51.8
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 9.3e-38 161.0 195 50.8
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.2e-37 160.6 198 52.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.2e-37 160.6 202 53.5
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.7e-37 159.5 208 49.0
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 3.5e-37 159.1 209 49.8
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 6.1e-37 158.3 206 51.9
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 6.1e-37 158.3 201 55.2
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.0e-36 157.5 211 48.8
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-36 157.1 198 52.0
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-36 156.0 192 51.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.9e-36 155.6 210 49.0
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.9e-35 153.3 207 49.8
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 3.3e-35 152.5 214 47.2
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.3e-35 152.5 192 50.0
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.3e-35 152.5 195 48.2
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 5.7e-35 151.8 209 46.9
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.7e-35 151.0 197 52.3
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 9.7e-35 151.0 197 52.3
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.2e-34 149.8 217 46.5
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.2e-34 149.8 193 45.6
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.8e-34 149.4 186 52.7
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.8e-34 149.4 197 51.8
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.7e-34 149.1 211 46.9
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.3e-34 148.3 217 46.1
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 6.3e-34 148.3 202 50.5
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.2e-34 147.9 221 45.7
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-33 147.5 213 46.5
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.8e-33 146.7 210 47.6
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.8e-33 146.7 197 48.2
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.4e-33 146.4 221 44.3
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 6.9e-33 144.8 213 45.5
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.5e-32 143.7 211 45.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 3.4e-32 142.5 212 43.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.4e-32 142.5 185 48.6
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 5.9e-32 141.7 216 44.4
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 7.7e-32 141.4 195 45.6
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 7.7e-32 141.4 171 50.3
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 7.7e-32 141.4 209 47.4
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.3e-31 140.6 227 44.1
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.7e-31 140.2 212 48.1
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.2e-31 139.8 199 46.7
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 3.8e-31 139.0 202 46.5
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 5.0e-31 138.7 209 45.5
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 5.0e-31 138.7 218 45.0
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 6.5e-31 138.3 199 47.7
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.5e-31 137.9 194 47.4
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.9e-30 136.7 214 43.9
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.9e-30 136.7 212 46.7
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 3.2e-30 136.0 189 47.1
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.2e-30 136.0 177 52.5
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.2e-30 136.0 196 43.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.2e-30 135.6 202 42.6
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-29 132.5 171 49.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 4.6e-29 132.1 202 42.1
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 7.9e-29 131.3 171 49.1
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 7.9e-29 131.3 240 40.8
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 7.9e-29 131.3 209 45.9
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-28 130.2 189 45.5
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.8e-28 130.2 206 47.6
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.3e-28 129.8 214 43.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 3.9e-28 129.0 207 44.0
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 3.9e-28 129.0 210 46.2
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.3e-27 125.9 210 42.4
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 7.4e-27 124.8 192 47.4
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 9.7e-27 124.4 204 42.2
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.2e-26 123.2 250 37.2
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 8.2e-26 121.3 120 61.7
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-25 119.8 189 42.3
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 4.1e-25 119.0 201 45.3
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 4.1e-25 119.0 196 44.9
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.5e-24 117.1 195 44.1
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 2.6e-24 116.3 196 43.4
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.4e-24 115.9 191 41.4
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.5e-24 115.5 221 39.4
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.0e-23 114.4 196 43.4
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.3e-23 114.0 189 45.0
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 5.0e-23 112.1 170 45.3
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 8.5e-23 111.3 207 40.1
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 8.5e-23 111.3 211 38.9
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.2e-22 109.4 210 39.5
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.2e-22 109.0 204 38.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 5.5e-22 108.6 235 36.2
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 7.2e-22 108.2 95 63.2
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-21 107.5 201 38.8
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.1e-21 106.7 196 38.3
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 4.7e-21 105.5 199 37.7
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 7.9e-21 104.8 192 39.1
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 7.9e-21 104.8 192 39.1
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 7.9e-21 104.8 192 39.1
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.8e-20 103.6 199 35.7
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.3e-20 103.2 191 39.3
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 3.0e-20 102.8 162 44.4
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.7e-20 101.7 197 35.0
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.5e-19 100.5 190 37.4
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.0e-19 100.1 196 39.3
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.2e-18 96.7 200 36.5
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-17 94.4 190 37.9
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.1e-17 94.4 190 37.9
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-17 94.0 188 36.7
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-17 94.0 188 36.7
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.6e-16 89.7 190 37.4
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.3e-15 87.4 186 40.3
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-15 87.0 189 36.5
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.7e-15 87.0 99 52.5
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 6.5e-15 85.1 76 59.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.5e-14 84.0 83 57.8
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 1.5e-14 84.0 225 33.8
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 2.7e-13 79.7 71 60.6
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.7e-13 79.7 155 37.4
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 6.1e-13 78.6 193 37.3
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 8.0e-13 78.2 191 34.6
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.0e-12 76.3 200 35.0
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 3.0e-12 76.3 192 34.4
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.6e-11 73.2 202 35.1
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 9.1e-09 64.7 58 56.9
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.6e-08 63.2 121 33.9
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.6e-08 63.2 190 30.5
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 3.5e-08 62.8 178 28.7
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 7.7e-08 61.6 191 31.4
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.9e-07 59.7 195 31.3
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 6.5e-07 58.5 164 33.5
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 8.5e-07 58.2 199 32.7
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 1.5e-06 57.4 195 27.7
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 1.9e-06 57.0 212 30.2
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 4.2e-06 55.8 179 31.3
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 9.4e-06 54.7 187 31.0


User provided reference genes

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