Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 7.2e-139 497.3 258 100.0
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 1.4e-118 429.9 258 87.2
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 2.0e-117 426.0 260 84.6
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 3.5e-117 425.2 258 86.4
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 3.3e-115 418.7 260 82.7
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.8e-114 415.6 260 82.3
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.8e-114 415.6 260 82.3
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 6.1e-114 414.5 260 82.7
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 3.5e-101 372.1 257 72.4
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 6.0e-101 371.3 248 75.8
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 1.0e-100 370.5 254 72.0
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.1e-98 362.8 245 72.7
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 2.8e-98 362.5 243 74.1
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 3.6e-98 362.1 257 73.2
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 1.1e-97 360.5 238 75.2
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 4.0e-97 358.6 247 72.5
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 5.2e-97 358.2 254 71.3
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 6.8e-97 357.8 260 73.8
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 8.9e-97 357.5 250 73.6
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 2.0e-96 356.3 254 73.2
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.4e-96 355.5 257 71.6
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 7.5e-96 354.4 256 70.3
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 7.5e-96 354.4 252 73.4
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 3.7e-95 352.1 257 72.4
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 8.3e-95 350.9 251 69.3
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 4.1e-94 348.6 258 69.8
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 4.1e-94 348.6 244 73.0
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 5.4e-94 348.2 248 71.4
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 7.1e-94 347.8 257 70.8
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 1.6e-93 346.7 254 68.5
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.6e-93 346.7 257 70.4
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 2.1e-93 346.3 241 74.3
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 4.6e-93 345.1 231 74.0
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 1.3e-92 343.6 231 73.6
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 3.0e-92 342.4 258 72.1
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 3.9e-92 342.0 247 72.5
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 8.6e-92 340.9 231 73.2
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 4.3e-91 338.6 244 70.9
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 7.3e-91 337.8 223 75.8
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 9.5e-91 337.4 258 68.2
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 2.8e-90 335.9 250 68.0
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 3.6e-90 335.5 251 68.1
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 1.1e-89 334.0 251 69.3
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.4e-89 333.6 234 72.2
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.2e-88 330.5 237 69.6
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.2e-88 330.5 237 69.6
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 2.0e-88 329.7 251 67.7
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 2.6e-88 329.3 253 68.0
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 3.4e-88 328.9 245 69.4
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.7e-87 326.6 245 69.0
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 4.9e-87 325.1 273 63.0
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 8.4e-87 324.3 220 73.2
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.4e-86 323.6 237 69.6
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 2.4e-86 322.8 255 65.1
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 3.2e-86 322.4 220 72.7
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 3.2e-86 322.4 254 66.1
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 5.4e-86 321.6 257 63.8
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 5.4e-86 321.6 253 66.4
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 9.2e-86 320.9 255 65.1
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 1.2e-85 320.5 236 67.8
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 2.1e-85 319.7 252 66.7
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 2.1e-85 319.7 257 66.1
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 6.0e-85 318.2 213 74.6
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 7.8e-85 317.8 239 66.5
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 3.0e-84 315.8 258 61.6
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 3.9e-84 315.5 224 66.5
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 3.9e-84 315.5 234 66.7
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 5.1e-84 315.1 199 78.4
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 5.1e-84 315.1 233 65.7
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 1.9e-83 313.2 200 75.0
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 1.9e-83 313.2 252 60.7
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 2.5e-83 312.8 242 65.7
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 5.6e-83 311.6 254 61.4
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 7.3e-83 311.2 236 66.5
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 7.3e-83 311.2 242 65.3
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.6e-82 310.1 251 63.7
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 2.1e-82 309.7 255 62.0
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 2.1e-82 309.7 232 65.9
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 2.8e-82 309.3 255 62.0
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 2.8e-82 309.3 256 61.7
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 4.7e-82 308.5 224 69.6
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 1.1e-81 307.4 218 69.7
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 2.4e-81 306.2 252 62.3
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 5.2e-81 305.1 257 60.3
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 5.2e-81 305.1 244 65.2
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 6.8e-81 304.7 252 62.3
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 6.8e-81 304.7 231 67.5
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 1.2e-80 303.9 246 61.8
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 1.2e-80 303.9 252 61.9
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 1.2e-80 303.9 252 61.9
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 1.5e-80 303.5 389 45.5
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 5.4e-78 295.0 248 62.5
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 1.2e-77 293.9 219 66.7
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 5.6e-75 285.0 237 62.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 4.8e-74 282.0 232 63.4
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 2.4e-73 279.6 247 61.1
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 2.4e-65 253.1 191 63.9
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 6.0e-61 238.4 223 54.7
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 7.9e-61 238.0 237 50.6
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 9.6e-59 231.1 221 54.8
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 2.1e-58 229.9 202 57.4
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 3.8e-55 219.2 215 56.7
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 4.1e-49 199.1 149 68.5
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 6.7e-44 181.8 198 50.0
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 1.5e-43 180.6 139 64.7
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 2.3e-36 156.8 98 77.6
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 2.8e-34 149.8 101 70.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 8.2e-34 148.3 119 63.9
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 7.0e-25 118.6 104 65.4
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.3e-18 97.8 216 34.7
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 6.3e-10 68.9 209 28.2
HanXRQChr09g0267031 Helianthus annuus HOM05D005243 ORTHO05D006670 1.0e-07 61.6 187 28.3
CDE04G2106 Ceratophyllum demersum HOM05D005243 ORTHO05D006670 2.2e-07 60.5 182 28.6
Sed0009328 Sechium edule HOM05D005243 ORTHO05D006670 5.0e-07 59.3 209 28.2
Atru.chr13.2491 Acer truncatum HOM05D005243 ORTHO05D006670 6.5e-07 58.9 225 25.3
Atru.chr13.2503 Acer truncatum HOM05D005243 ORTHO05D006670 6.5e-07 58.9 225 25.3
GSVIVG01036301001 Vitis vinifera HOM05D005243 ORTHO05D006670 6.5e-07 58.9 186 28.0
Lsat_1_v5_gn_4_135781 Lactuca sativa HOM05D005243 ORTHO05D006670 8.5e-07 58.5 186 27.4
SGA_v2.0_scaffold118G32611 Striga asiatica HOM05D005243 ORTHO05D006670 1.1e-06 58.2 186 28.0
Hma1.2p1_0016F.1_g010690 Hydrangea macrophylla HOM05D005243 ORTHO05D006670 1.5e-06 57.8 208 27.4
Cfa006116 Carpinus fangiana HOM05D001530 ORTHO05D003676 1.9e-06 57.4 202 27.7
MD10G1004900 Malus domestica HOM05D005243 ORTHO05D006670 1.9e-06 57.4 188 27.7
Prupe.8G007400 Prunus persica HOM05D005243 ORTHO05D006670 3.2e-06 56.6 188 27.7
THA.LOC104810374 Tarenaya hassleriana HOM05D005243 ORTHO05D006670 4.2e-06 56.2 186 27.4
Aa31LG4G9150 Aethionema arabicum HOM05D005243 ORTHO05D006670 5.5e-06 55.8 186 28.0
Cfa008079 Carpinus fangiana HOM05D005243 ORTHO05D006670 5.5e-06 55.8 186 26.9
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 5.5e-06 55.8 141 25.5
RcHm_v2.0_Chr6g0251261 Rosa chinensis HOM05D005243 ORTHO05D006670 5.5e-06 55.8 186 27.4
QL09p001863 Quercus lobata HOM05D005243 ORTHO05D006670 7.2e-06 55.5 186 27.4
QL11p001747 Quercus lobata HOM05D005243 ORTHO05D006670 9.4e-06 55.1 186 26.9


User provided reference genes

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