Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G207300 Prunus persica HOM05D003581 ORTHO05D004332 3.8e-229 797.7 385 100.0
MD00G1149500 Malus domestica HOM05D003581 ORTHO05D004332 1.6e-198 696.0 405 84.9
FvH4_3g33330 Fragaria vesca HOM05D003581 ORTHO05D004332 2.8e-187 658.7 406 78.6
FAN11G3774 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.5e-185 652.9 405 77.5
RcHm_v2.0_Chr5g0060731 Rosa chinensis HOM05D003581 ORTHO05D004332 4.3e-180 634.8 407 76.9
Potri.013G127000 Populus trichocarpa HOM05D003581 ORTHO05D004332 4.8e-179 631.3 407 75.4
Duzib268G0130 Durio zibethinus HOM05D003581 ORTHO05D004332 5.3e-178 627.9 368 83.2
Dinv33206 Davidia involucrata HOM05D003581 ORTHO05D004332 9.0e-178 627.1 407 75.7
TWI63G1729 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 1.5e-177 626.3 407 76.9
Ciclev10019435m.g Citrus clementina HOM05D003581 ORTHO05D004332 8.4e-176 620.5 407 76.7
FAN25G3295 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.9e-175 619.4 422 73.2
Dinv07056 Davidia involucrata HOM05D003581 ORTHO05D004332 4.2e-175 618.2 407 74.7
PGR042G0246 Punica granatum HOM05D003581 ORTHO05D004332 5.5e-175 617.8 407 75.2
Cfa015269 Carpinus fangiana HOM05D003581 ORTHO05D004332 9.3e-175 617.1 407 75.4
FAN16G1590 Fragaria x ananassa HOM05D003581 ORTHO05D004332 9.3e-175 617.1 422 73.5
TWI15G0618 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 2.7e-174 615.5 407 75.2
CiPaw.02G100300 Carya illinoinensis HOM05D003581 ORTHO05D004332 3.0e-173 612.1 407 75.4
GSVIVG01038144001 Vitis vinifera HOM05D003581 ORTHO05D004332 5.1e-173 611.3 406 74.4
Gohir.A02G009800 Gossypium hirsutum HOM05D003581 ORTHO05D004332 2.5e-172 609.0 407 74.2
SalBow3G1683 Salvia bowleyana HOM05D003581 ORTHO05D004332 2.5e-172 609.0 415 72.8
Thecc.04G165500 Theobroma cacao HOM05D003581 ORTHO05D004332 4.3e-172 608.2 407 74.9
Manes.11G129000 Manihot esculenta HOM05D003581 ORTHO05D004332 7.4e-172 607.4 405 74.3
arahy.Tifrunner.gnm1.ann1.CYNM9M Arachis hypogaea HOM05D003581 ORTHO05D004332 1.6e-171 606.3 407 73.0
Eucgr.L00003 Eucalyptus grandis HOM05D003581 ORTHO05D004332 1.6e-171 606.3 407 74.4
COL.COLO4_06497 Corchorus olitorius HOM05D003581 ORTHO05D004332 2.1e-171 605.9 426 72.1
Atru.chr4.1420 Acer truncatum HOM05D003581 ORTHO05D004332 2.8e-171 605.5 407 74.2
VMungo0251G3355 Vigna mungo HOM05D003581 ORTHO05D004332 2.8e-171 605.5 408 74.0
Glyma.07G207700 Glycine max HOM05D003581 ORTHO05D004332 3.1e-170 602.1 408 73.5
Gohir.D02G010000 Gossypium hirsutum HOM05D003581 ORTHO05D004332 3.1e-170 602.1 407 74.0
Gorai.005G012300 Gossypium raimondii HOM05D003581 ORTHO05D004332 3.1e-170 602.1 407 74.0
Nn7g37551 Nelumbo nucifera HOM05D003581 ORTHO05D004332 3.1e-170 602.1 407 73.2
TAR362G0335 Trochodendron aralioides HOM05D003581 ORTHO05D004332 3.1e-170 602.1 407 74.0
FAN21G3444 Fragaria x ananassa HOM05D003581 ORTHO05D004332 2.0e-169 599.4 406 73.4
Ciclev10019432m.g Citrus clementina HOM05D003581 ORTHO05D004332 5.8e-169 597.8 407 74.2
Duzib212G0814 Durio zibethinus HOM05D003581 ORTHO05D004332 7.6e-169 597.4 407 74.2
Ciclev10019423m.g Citrus clementina HOM05D003581 ORTHO05D004332 1.0e-168 597.0 407 74.4
Lj4g0012121 Lotus japonicus HOM05D003581 ORTHO05D004332 1.3e-168 596.7 407 73.5
Phvul.003G296800 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 1.7e-168 596.3 408 72.8
Glyma.02G137700 Glycine max HOM05D003581 ORTHO05D004332 3.8e-168 595.1 409 73.1
HanXRQChr02g0059151 Helianthus annuus HOM05D003581 ORTHO05D004332 4.9e-168 594.7 405 72.3
Migut.G01176 Erythranthe guttata HOM05D003581 ORTHO05D004332 6.5e-168 594.3 407 72.7
Lalb_Chr05g0218901 Lupinus albus HOM05D003581 ORTHO05D004332 8.4e-168 594.0 407 72.2
TPR.G23544 Trifolium pratense HOM05D003581 ORTHO05D004332 8.4e-168 594.0 407 72.7
Ca_18637_v3 Cicer arietinum L. HOM05D003581 ORTHO05D004332 5.5e-167 591.3 407 72.2
arahy.Tifrunner.gnm1.ann1.S0PZLW Arachis hypogaea HOM05D003581 ORTHO05D004332 9.3e-167 590.5 407 71.7
Hma1.2p1_0108F.1_g051730 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 4.6e-166 588.2 407 72.5
Psat7g120160 Pisum sativum HOM05D003581 ORTHO05D004332 1.8e-165 586.3 407 72.0
CSS0022611 Camellia sinensis var. sinensis HOM05D003581 ORTHO05D004332 3.0e-165 585.5 407 72.2
Cc03_g14130 Coffea canephora HOM05D003581 ORTHO05D004332 6.7e-165 584.3 407 71.0
Medtr4g087320 Medicago truncatula HOM05D003581 ORTHO05D004332 1.1e-164 583.6 407 71.7
PSO017G3340 Papaver somniferum HOM05D003581 ORTHO05D004332 4.3e-164 581.6 406 71.7
PSO837G0047 Papaver somniferum HOM05D003581 ORTHO05D004332 4.3e-164 581.6 406 71.9
MSTRG.4302 Avicennia marina HOM05D003581 ORTHO05D004332 4.8e-163 578.2 407 70.5
QL10p055884 Quercus lobata HOM05D003581 ORTHO05D004332 2.4e-162 575.9 441 67.8
Lalb_Chr16g0384431 Lupinus albus HOM05D003581 ORTHO05D004332 6.9e-162 574.3 407 70.5
Aqoxy2G04153 Aquilegia oxysepala HOM05D003581 ORTHO05D004332 9.0e-162 573.9 407 69.5
Sc19g0002230 Simmondsia chinensis HOM05D003581 ORTHO05D004332 1.2e-161 573.5 407 71.5
Sopen08g005080 Solanum pennellii HOM05D003581 ORTHO05D004332 1.2e-161 573.5 413 69.7
Sabra13G0106000 Salix brachista HOM05D003581 ORTHO05D004332 4.5e-161 571.6 515 58.8
Lj6A212G5 Lonicera japonica HOM05D003581 ORTHO05D004332 7.6e-161 570.9 451 64.3
Rhsim02G0084300 Rhododendron simsii HOM05D003581 ORTHO05D004332 2.2e-160 569.3 444 66.9
Oeu016612.2 Olea europaea HOM05D003581 ORTHO05D004332 8.5e-160 567.4 407 69.3
Peaxi162Scf00075g01320 Petunia axillaris HOM05D003581 ORTHO05D004332 1.4e-159 566.6 424 67.9
Solyc08g014150.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 1.9e-159 566.2 413 68.8
CsaV3_4G002790 Cucumis sativus L. HOM05D003581 ORTHO05D004332 3.2e-159 565.5 407 68.8
Hma1.2p1_0150F.1_g066840 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 5.5e-159 564.7 408 70.1
BcaB02g07454 Brassica carinata HOM05D003581 ORTHO05D004332 7.2e-159 564.3 408 69.6
BcaC08g44999 Brassica carinata HOM05D003581 ORTHO05D004332 1.2e-158 563.5 408 69.6
BolC6t37794H Brassica oleracea HOM05D003581 ORTHO05D004332 1.2e-158 563.5 408 69.6
ECA248G0552 Erigeron canadensis HOM05D003581 ORTHO05D004332 1.6e-158 563.1 407 69.3
Gorai.011G135600 Gossypium raimondii HOM05D003581 ORTHO05D004332 3.6e-158 562.0 407 69.0
MBI11_g16039_MAGBIO Magnolia biondii HOM05D003581 ORTHO05D004332 3.6e-158 562.0 425 67.5
Gohir.D10G123100 Gossypium hirsutum HOM05D003581 ORTHO05D004332 4.6e-158 561.6 407 69.0
MELO3C017762.2 Cucumis melo HOM05D003581 ORTHO05D004332 6.1e-158 561.2 409 68.5
Sed0001548 Sechium edule HOM05D003581 ORTHO05D004332 5.1e-157 558.1 408 69.1
Aa31LG10G13950 Aethionema arabicum HOM05D003581 ORTHO05D004332 1.5e-156 556.6 408 67.6
AT3G59660 Arabidopsis thaliana HOM05D003581 ORTHO05D004332 2.5e-156 555.8 408 68.6
AL5G41730 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 3.3e-156 555.4 408 68.6
HanXRQChr11g0343141 Helianthus annuus HOM05D003581 ORTHO05D004332 4.3e-156 555.1 406 68.2
BcaC07g40497 Brassica carinata HOM05D003581 ORTHO05D004332 5.7e-156 554.7 409 68.5
C08p34660 Brassica napus HOM05D003581 ORTHO05D004332 5.7e-156 554.7 409 68.5
Carub.0005s2638 Capsella rubella HOM05D003581 ORTHO05D004332 5.7e-156 554.7 408 68.4
Thhalv10005851m.g Eutrema salsugineum HOM05D003581 ORTHO05D004332 1.3e-155 553.5 408 68.4
CARHR170030 Cardamine hirsuta HOM05D003581 ORTHO05D004332 1.6e-155 553.1 408 68.1
HPP92_012802 Vanilla planifolia HOM05D003581 ORTHO05D004332 2.2e-155 552.7 407 66.8
Sp5g03520 Schrenkiella parvula HOM05D003581 ORTHO05D004332 4.8e-155 551.6 408 68.6
CDE02G2835 Ceratophyllum demersum HOM05D003581 ORTHO05D004332 6.3e-155 551.2 407 68.1
BolC8t51068H Brassica oleracea HOM05D003581 ORTHO05D004332 8.2e-155 550.8 413 67.6
Nitab4.5_0001586g0020 Nicotiana tabacum HOM05D003581 ORTHO05D004332 8.2e-155 550.8 404 69.6
Sed0016715 Sechium edule HOM05D003581 ORTHO05D004332 4.1e-154 548.5 407 68.6
Nitab4.5_0000013g0560 Nicotiana tabacum HOM05D003581 ORTHO05D004332 5.3e-154 548.1 388 71.1
C06p26310 Brassica napus HOM05D003581 ORTHO05D004332 9.1e-154 547.4 434 65.4
A07p24730 Brassica napus HOM05D003581 ORTHO05D004332 1.2e-153 547.0 434 65.2
A09p51980 Brassica napus HOM05D003581 ORTHO05D004332 1.2e-153 547.0 415 67.2
Nitab4.5_0001411g0030 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.5e-153 546.6 388 71.1
Gohir.A10G143900 Gossypium hirsutum HOM05D003581 ORTHO05D004332 2.6e-153 545.8 407 68.1
Os09g0516900 Oryza sativa ssp. japonica HOM05D003581 ORTHO05D004332 7.7e-153 544.3 407 66.6
BraA09t40631Z Brassica rapa HOM05D003581 ORTHO05D004332 2.2e-152 542.7 413 66.8
CAN.G136.12 Capsicum annuum HOM05D003581 ORTHO05D004332 2.9e-152 542.3 408 68.1
ATR0743G267 Amborella trichopoda HOM05D003581 ORTHO05D004332 1.1e-151 540.4 407 65.8
Peaxi162Scf00180g00011 Petunia axillaris HOM05D003581 ORTHO05D004332 1.1e-151 540.4 411 68.1
THA.LOC104817844 Tarenaya hassleriana HOM05D003581 ORTHO05D004332 3.2e-151 538.9 407 67.3
Sopen06g018480 Solanum pennellii HOM05D003581 ORTHO05D004332 5.5e-151 538.1 407 67.8
Lsat_1_v5_gn_6_65760 Lactuca sativa HOM05D003581 ORTHO05D004332 1.2e-150 537.0 387 69.5
DCAR_027523 Daucus carota HOM05D003581 ORTHO05D004332 1.6e-150 536.6 387 68.5
Zm00001eb318620 Zea mays HOM05D003581 ORTHO05D004332 1.0e-149 533.9 407 65.6
Lsat_1_v5_gn_1_74961 Lactuca sativa HOM05D003581 ORTHO05D004332 1.4e-149 533.5 386 69.7
Solyc06g053420.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 1.8e-149 533.1 425 64.9
Zm00001eb102830 Zea mays HOM05D003581 ORTHO05D004332 3.3e-148 528.9 407 65.1
Haze_01360 Corylus avellana HOM05D003581 ORTHO05D004332 4.4e-148 528.5 370 72.2
SGA_v2.0_scaffold283G46956 Striga asiatica HOM05D003581 ORTHO05D004332 3.7e-147 525.4 370 71.9
EL10Ac3g06090 Beta vulgaris HOM05D003581 ORTHO05D004332 2.6e-145 519.2 439 61.0
ClCG07G015200 Citrullus lanatus HOM05D003581 ORTHO05D004332 3.8e-144 515.4 388 67.3
Lju470A15G16 Lonicera japonica HOM05D003581 ORTHO05D004332 6.5e-144 514.6 429 63.6
AUR62002403 Chenopodium quinoa HOM05D003581 ORTHO05D004332 4.2e-143 511.9 414 65.2
AUR62023792 Chenopodium quinoa HOM05D003581 ORTHO05D004332 7.2e-143 511.1 421 63.9
Oeu050335.1 Olea europaea HOM05D003581 ORTHO05D004332 3.0e-141 505.8 438 61.2
Peaxi162Scf00568g00013 Petunia axillaris HOM05D003581 ORTHO05D004332 3.9e-141 505.4 411 64.0
MSTRG.9734 Avicennia marina HOM05D003581 ORTHO05D004332 2.6e-137 492.7 407 63.4
Actinidia02585 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.7e-136 490.0 419 61.6
unitig_747.g21694 Utricularia gibba HOM05D003581 ORTHO05D004332 2.2e-136 489.6 397 64.0
Duzib151G0128 Durio zibethinus HOM05D003581 ORTHO05D004332 5.7e-132 474.9 405 61.7
SEGI_00445 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 5.3e-130 468.4 414 56.8
Actinidia11443 Actinidia chinensis HOM05D003581 ORTHO05D004332 3.8e-128 462.2 406 61.1
Migut.N03065 Erythranthe guttata HOM05D003581 ORTHO05D004332 1.5e-124 450.3 412 55.8
arahy.Tifrunner.gnm1.ann1.QCV2L4 Arachis hypogaea HOM05D003581 ORTHO05D004332 1.7e-123 446.8 407 58.0
MSTRG.22033 Avicennia marina HOM05D003581 ORTHO05D004332 8.6e-120 434.5 488 49.8
Rhsim09G0009900 Rhododendron simsii HOM05D003581 ORTHO05D004332 6.1e-118 428.3 419 55.6
SalBow6G2049 Salvia bowleyana HOM05D003581 ORTHO05D004332 2.3e-117 426.4 463 50.5
Mapoly0029s0087 Marchantia polymorpha HOM05D003581 ORTHO05D004332 1.1e-114 417.5 413 50.8
Ah.13g073460 Amaranthus hybridus HOM05D003581 ORTHO05D004332 1.5e-111 407.1 436 53.0
AagrBONN_evm.TU.Sc2ySwM_228.999 Anthoceros agrestis HOM05D003581 ORTHO05D004332 8.0e-110 401.4 395 51.6
Pp3c15_5890 Physcomitrium patens HOM05D003581 ORTHO05D004332 6.8e-109 398.3 409 48.9
Oeu015721.1 Olea europaea HOM05D003581 ORTHO05D004332 1.6e-105 387.1 261 73.2
Zm00001eb246670 Zea mays HOM05D003581 ORTHO05D004332 7.5e-100 368.2 409 46.9
CBR_g46857 Chara braunii HOM05D003581 ORTHO05D004332 1.7e-99 367.1 439 44.9
CAN.G759.9 Capsicum annuum HOM05D003581 ORTHO05D004332 2.9e-99 366.3 304 63.5
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 2.0e-97 360.1 371 53.6
BraA07t30118Z Brassica rapa HOM05D003581 ORTHO05D004332 3.5e-97 359.4 232 75.0
Lj6A223G7 Lonicera japonica HOM05D003581 ORTHO05D004332 2.8e-94 349.7 386 51.8
Oeu015722.1 Olea europaea HOM05D003581 ORTHO05D004332 1.4e-93 347.4 382 52.4
Nitab4.5_0024222g0010 Nicotiana tabacum HOM05D003581 ORTHO05D004332 6.4e-91 338.6 240 70.0
SMO358G0294 Selaginella moellendorffii HOM05D003581 ORTHO05D004332 3.2e-90 336.3 411 45.3
FAN21G2715 Fragaria x ananassa HOM05D003581 ORTHO05D004332 2.1e-86 323.6 228 70.2
DCAR_005472 Daucus carota HOM05D003581 ORTHO05D004332 5.2e-85 318.9 202 74.8
CiPaw.01G170400 Carya illinoinensis HOM05D003581 ORTHO05D004332 9.2e-82 308.1 220 72.3
Cpa.g.sc9.366 Carica papaya HOM05D003581 ORTHO05D004332 3.9e-80 302.8 187 77.5
PGSC0003DMG400014635 Solanum tuberosum HOM05D003581 ORTHO05D004332 1.7e-72 277.3 187 72.7
vmacro00696 Vaccinium macrocarpon HOM05D003581 ORTHO05D004332 2.4e-69 266.9 402 40.8
VMungo0251G0270 Vigna mungo HOM05D003581 ORTHO05D004332 6.4e-67 258.8 365 44.4
Glyma.02G137500 Glycine max HOM05D003581 ORTHO05D004332 2.4e-66 256.9 302 52.6
Phvul.003G296600 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 4.2e-66 256.1 338 46.4
Oeu015720.1 Olea europaea HOM05D003581 ORTHO05D004332 1.9e-63 247.3 139 84.9
CiPaw.01G170500 Carya illinoinensis HOM05D003581 ORTHO05D004332 5.6e-63 245.7 158 75.3
Hund03203 Selenicereus undatus HOM05D003581 ORTHO05D004332 1.6e-62 244.2 272 49.6
Ciclev10020241m.g Citrus clementina HOM05D003581 ORTHO05D004332 8.4e-59 231.9 165 67.3
Nitab4.5_0002544g0010 Nicotiana tabacum HOM05D003581 ORTHO05D004332 5.6e-55 219.2 143 76.9
Gohir.D02G010400 Gossypium hirsutum HOM05D000101 ORTHO05D002559 9.0e-53 211.8 128 75.0
FAN03G1615 Fragaria x ananassa HOM05D003581 ORTHO05D004332 2.2e-46 190.7 148 64.9
FAN08G0117 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.4e-45 188.0 149 63.8
Actinidia28980 Actinidia chinensis HOM05D003581 ORTHO05D004332 2.7e-41 173.7 140 62.1
DCAR_005471 Daucus carota HOM05D003581 ORTHO05D004332 3.0e-40 170.2 93 83.9
Cpa.g.sc9.367 Carica papaya HOM05D003581 ORTHO05D004332 1.9e-34 151.0 123 65.0
vmacro00695 Vaccinium macrocarpon HOM05D003581 ORTHO05D004332 2.3e-32 144.1 93 73.1
FAN02G4325 Fragaria x ananassa HOM05D003581 ORTHO05D004332 3.0e-32 143.7 67 92.5
Glyma.07G207902 Glycine max HOM05D003581 ORTHO05D004332 8.8e-32 142.1 143 58.0
HanXRQChr08g0224081 Helianthus annuus HOM05D003581 ORTHO05D004332 2.6e-28 130.6 79 77.2
CAN.G759.10 Capsicum annuum HOM05D003581 ORTHO05D004332 3.4e-28 130.2 66 86.4
MELO3C025672.2 Cucumis melo HOM05D003581 ORTHO05D004332 5.5e-26 122.9 79 72.2
SEGI_09569 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 5.5e-26 122.9 68 76.5
HanXRQChr15g0474821 Helianthus annuus HOM05D003581 ORTHO05D004332 3.7e-22 110.2 137 46.0
Actinidia28979 Actinidia chinensis HOM05D003581 ORTHO05D004332 7.0e-21 105.9 55 89.1
Os02g0605400 Oryza sativa ssp. japonica HOM05D003581 ORTHO05D004332 1.7e-19 101.3 70 64.3
CSS0011136 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 6.7e-16 89.4 83 60.2
MELO3C026654.2 Cucumis melo HOM05D003581 ORTHO05D004332 5.7e-15 86.3 51 76.5
MELO3C031715.2 Cucumis melo HOM05D003581 ORTHO05D004332 5.7e-15 86.3 51 76.5
AL5G41680 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 2.8e-14 84.0 42 85.7
QL01p009485 Quercus lobata HOM05D003581 ORTHO05D004332 5.2e-08 63.2 40 70.0
QL03p007878 Quercus lobata HOM05D003581 ORTHO05D023237 3.4e-07 60.5 35 82.9
PRCOL_00002228 Prasinoderma coloniale HOM05D004530 ORTHO05D005839 9.8e-07 58.9 129 27.9
PRCOL_00001515 Prasinoderma coloniale HOM05D004530 ORTHO05D005839 1.7e-06 58.2 113 26.5
Actinidia12143 Actinidia chinensis HOM05D004530 ORTHO05D005839 6.3e-06 56.2 289 23.2
Rhsim07G0036000 Rhododendron simsii HOM05D004530 ORTHO05D005839 6.3e-06 56.2 156 27.6
Eucgr.L01993 Eucalyptus grandis HOM05D002176 ORTHO05D002598 8.3e-06 55.8 109 30.3


User provided reference genes

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