Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G206600 Prunus persica HOM05D004597 ORTHO05D005629 6.6e-82 307.4 161 100.0
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 3.6e-64 248.4 205 71.7
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 1.2e-54 216.9 206 63.1
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 3.4e-54 215.3 206 62.1
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 3.4e-54 215.3 206 62.1
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 3.4e-54 215.3 206 62.1
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 4.5e-54 214.9 206 62.1
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.3e-53 213.4 206 61.7
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 1.7e-53 213.0 205 62.9
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 2.1e-51 206.1 205 61.5
FAN28G1763 Fragaria x ananassa HOM05D004597 ORTHO05D005629 3.5e-51 205.3 231 55.4
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 6.0e-51 204.5 205 59.5
Hma1.2p1_0169F.1_g074350 Hydrangea macrophylla HOM05D004597 ORTHO05D005629 7.9e-51 204.1 175 66.3
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 3.9e-50 201.8 196 60.7
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 3.9e-50 201.8 211 57.8
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 3.9e-50 201.8 196 59.2
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 5.1e-50 201.4 211 58.3
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 6.7e-50 201.1 209 56.5
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 1.5e-49 199.9 201 58.7
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 1.5e-49 199.9 200 57.5
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 2.5e-49 199.1 209 56.0
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 9.6e-49 197.2 205 55.6
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 9.6e-49 197.2 205 57.1
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 1.3e-48 196.8 196 59.2
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 1.3e-48 196.8 209 56.0
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 1.6e-48 196.4 205 57.1
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.8e-48 195.7 196 57.7
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 2.8e-48 195.7 201 56.7
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 6.2e-48 194.5 196 58.2
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 6.2e-48 194.5 194 59.3
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 1.1e-47 193.7 205 56.6
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 1.4e-47 193.4 201 56.7
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 1.4e-47 193.4 196 59.2
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 5.3e-47 191.4 205 56.1
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 5.3e-47 191.4 208 56.2
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 5.3e-47 191.4 196 57.7
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 6.9e-47 191.0 201 55.7
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 6.9e-47 191.0 207 55.6
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 9.0e-47 190.7 199 56.3
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 9.0e-47 190.7 194 58.2
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 1.2e-46 190.3 196 57.1
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 1.5e-46 189.9 196 57.1
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 1.5e-46 189.9 194 57.7
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 2.0e-46 189.5 211 54.5
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 2.6e-46 189.1 201 53.2
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 4.5e-46 188.3 209 53.6
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 5.8e-46 188.0 204 54.9
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 5.8e-46 188.0 207 53.6
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 5.8e-46 188.0 196 56.6
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 7.6e-46 187.6 208 54.3
Eucgr.C00774 Eucalyptus grandis HOM05D004597 ORTHO05D005629 9.9e-46 187.2 207 54.6
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 9.9e-46 187.2 209 53.6
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 9.9e-46 187.2 192 56.8
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 1.3e-45 186.8 206 53.9
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 1.7e-45 186.4 203 55.2
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 1.7e-45 186.4 198 55.6
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 2.2e-45 186.0 194 57.7
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 2.9e-45 185.7 197 54.3
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 3.8e-45 185.3 197 54.3
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 6.4e-45 184.5 198 54.0
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 6.4e-45 184.5 198 55.6
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 6.4e-45 184.5 207 54.1
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 8.4e-45 184.1 213 54.5
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 8.4e-45 184.1 192 56.2
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 8.4e-45 184.1 194 54.6
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 1.4e-44 183.3 192 56.2
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 2.4e-44 182.6 207 54.1
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 4.2e-44 181.8 208 52.9
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 5.5e-44 181.4 199 53.3
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 7.1e-44 181.0 201 52.2
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 9.3e-44 180.6 208 53.4
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 1.6e-43 179.9 203 53.2
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 1.6e-43 179.9 203 53.2
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 1.6e-43 179.9 197 53.3
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 2.7e-43 179.1 200 52.5
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 3.5e-43 178.7 207 51.2
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 6.0e-43 177.9 211 53.1
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 6.0e-43 177.9 188 55.9
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 1.3e-42 176.8 206 52.9
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 1.3e-42 176.8 205 51.2
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 3.0e-42 175.6 205 52.2
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 3.0e-42 175.6 194 53.1
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 3.9e-42 175.3 161 59.6
MELO3C025034.2 Cucumis melo HOM05D004597 ORTHO05D005629 6.7e-42 174.5 241 46.5
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 1.1e-41 173.7 204 52.5
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 1.5e-41 173.3 205 52.2
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 1.9e-41 172.9 183 56.3
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 2.5e-41 172.6 192 54.2
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 3.3e-41 172.2 191 52.9
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 4.3e-41 171.8 197 52.8
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 9.6e-41 170.6 207 51.7
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 9.6e-41 170.6 207 51.7
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 9.6e-41 170.6 196 51.0
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 1.6e-40 169.9 204 51.5
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 1.6e-40 169.9 199 50.8
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 2.1e-40 169.5 184 54.3
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 2.1e-40 169.5 150 61.3
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 6.2e-40 167.9 206 50.0
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 4.0e-39 165.2 188 48.9
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 5.3e-39 164.9 154 55.8
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 2.0e-38 162.9 218 47.2
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 4.5e-38 161.8 204 48.0
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 5.8e-38 161.4 147 59.2
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 3.8e-37 158.7 189 52.4
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 8.4e-37 157.5 150 56.7
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 8.4e-37 157.5 191 48.7
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 1.4e-36 156.8 187 50.3
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 5.5e-36 154.8 187 51.3
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 9.3e-36 154.1 188 51.1
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 2.1e-35 152.9 187 52.4
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 2.7e-35 152.5 188 50.5
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 3.5e-35 152.1 204 49.0
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 7.9e-35 151.0 189 50.8
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 1.8e-34 149.8 187 50.3
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 3.9e-34 148.7 188 50.5
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 3.9e-34 148.7 188 50.5
Prupe.3G139200 Prunus persica HOM05D004597 ORTHO05D005629 4.3e-33 145.2 73 95.9
QL11p002682 Quercus lobata HOM05D004597 ORTHO05D005629 1.8e-31 139.8 72 91.7
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 4.1e-31 138.7 171 48.5
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 5.3e-31 138.3 187 43.9
vmacro17087 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 6.9e-31 137.9 73 90.4
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 1.1e-28 130.6 150 45.3
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 2.2e-24 116.3 185 37.3
CBR_g31073 Chara braunii HOM05D004597 ORTHO05D000002 6.3e-24 114.8 68 73.5
Lsat_1_v5_gn_7_82541 Lactuca sativa HOM05D004597 ORTHO05D005629 7.7e-22 107.8 116 50.9
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 7.7e-22 107.8 71 69.0
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 9.4e-20 100.9 120 47.5
THA.LOC104815153 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 3.6e-19 99.0 200 36.0
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 1.4e-18 97.1 156 32.7
QL11p002688 Quercus lobata HOM05D004597 ORTHO05D005629 2.8e-16 89.4 81 61.7
Gorai.004G285400 Gossypium raimondii HOM05D004597 ORTHO05D005629 1.2e-14 84.0 75 65.3
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 1.5e-14 83.6 199 37.7
vmacro17086 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 2.2e-13 79.7 86 52.3
Dinv42426 Davidia involucrata HOM05D004597 ORTHO05D005629 1.4e-12 77.0 87 56.3
Prupe.7G193400 Prunus persica HOM05D004597 ORTHO05D005629 9.4e-12 74.3 73 60.3
Cre10.g422300 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D005629 4.7e-11 72.0 72 45.8
TPR.G12546 Trifolium pratense HOM05D004597 ORTHO05D005629 6.1e-11 71.6 81 55.6
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 5.2e-10 68.6 130 37.7
THA.LOC104810985 Tarenaya hassleriana HOM05D004597 ORTHO05D406773 2.0e-09 66.6 160 35.0
TPR.G7463 Trifolium pratense HOM05D004597 ORTHO05D005629 1.1e-07 60.8 73 49.3
MELO3C030723.2 Cucumis melo HOM05D004597 ORTHO05D005629 2.0e-06 56.6 69 50.7
TPR.G24405 Trifolium pratense HOM05D004597 ORTHO05D005629 3.5e-06 55.8 44 63.6
PRCOL_00006100 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 5.9e-06 55.1 69 36.2


User provided reference genes

Program Settings