Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 4.6e-86 321.2 167 100.0
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 1.1e-71 273.5 167 83.8
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 1.3e-59 233.4 173 71.1
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 1.3e-59 233.4 169 72.8
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 6.9e-58 227.6 164 73.2
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 6.9e-58 227.6 164 73.2
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 1.2e-57 226.9 171 68.4
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 3.4e-57 225.3 171 67.8
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 4.5e-57 224.9 164 72.0
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 1.3e-56 223.4 174 65.5
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 1.3e-56 223.4 171 67.8
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 3.5e-54 215.3 175 66.3
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 3.3e-52 208.8 170 62.4
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 3.3e-52 208.8 178 66.3
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 3.3e-52 208.8 176 63.1
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 2.8e-51 205.7 170 64.1
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 4.8e-51 204.9 167 62.3
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 8.2e-51 204.1 183 60.7
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 9.0e-50 200.7 172 61.0
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 2.0e-49 199.5 176 61.9
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 2.6e-49 199.1 163 61.3
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 7.6e-49 197.6 165 61.8
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 1.3e-48 196.8 170 60.6
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.7e-48 196.4 174 62.6
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 2.2e-48 196.1 174 62.1
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 3.8e-48 195.3 166 62.0
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 6.5e-48 194.5 176 60.8
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 8.4e-48 194.1 177 62.1
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.9e-47 193.0 174 61.5
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 4.2e-47 191.8 174 60.9
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 5.5e-47 191.4 172 61.0
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 7.1e-47 191.0 166 60.8
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 7.1e-47 191.0 166 60.8
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 7.1e-47 191.0 166 60.8
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.2e-46 190.3 176 60.8
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.6e-46 189.9 176 60.8
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 2.1e-46 189.5 166 60.8
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 2.1e-46 189.5 166 60.8
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 2.1e-46 189.5 170 60.0
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 7.9e-46 187.6 171 61.4
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 7.9e-46 187.6 176 60.2
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 1.3e-45 186.8 173 57.8
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 1.8e-45 186.4 160 62.5
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 5.1e-45 184.9 168 61.3
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 6.7e-45 184.5 175 57.7
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 1.5e-44 183.3 168 58.9
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 3.3e-44 182.2 169 58.6
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 7.4e-44 181.0 174 56.3
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 9.7e-44 180.6 169 58.0
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 1.6e-43 179.9 172 57.0
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.1e-42 177.2 156 60.3
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 2.4e-42 176.0 170 55.3
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 4.1e-42 175.3 156 59.6
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 4.1e-42 175.3 170 56.5
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 9.0e-42 174.1 172 57.0
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 1.2e-41 173.7 170 54.7
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 4.5e-41 171.8 163 54.0
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 8.5e-40 167.5 176 51.7
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 4.2e-39 165.2 167 54.5
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.2e-38 163.7 169 53.8
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 2.7e-38 162.5 178 52.8
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 1.4e-37 160.2 153 56.9
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 3.0e-37 159.1 165 52.7
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 3.9e-37 158.7 169 53.8
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 5.1e-37 158.3 169 52.1
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 5.1e-37 158.3 171 54.4
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 6.7e-37 157.9 174 50.6
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 3.3e-36 155.6 168 51.8
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 5.7e-36 154.8 174 51.7
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 5.7e-36 154.8 169 51.5
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 7.4e-36 154.5 170 52.9
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 1.3e-35 153.7 170 52.9
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 2.2e-35 152.9 170 49.4
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 4.8e-35 151.8 170 52.4
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 4.1e-34 148.7 172 51.2
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 2.0e-33 146.4 169 52.1
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 6.5e-32 141.4 170 48.2
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 6.5e-32 141.4 162 50.0
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 1.4e-31 140.2 169 51.5
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 1.6e-30 136.7 172 45.9
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 4.7e-30 135.2 145 53.1
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 6.1e-30 134.8 122 58.2
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 1.4e-29 133.7 164 45.7
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 1.7e-27 126.7 166 47.0
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 3.1e-26 122.5 159 45.9
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 5.3e-26 121.7 164 44.5
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 2.0e-25 119.8 166 44.6
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 2.9e-24 115.9 143 47.6
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 2.9e-24 115.9 171 44.4
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 3.2e-23 112.5 166 42.2
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 7.2e-23 111.3 164 42.7
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 9.4e-23 110.9 140 42.9
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 2.1e-22 109.8 166 42.2
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 4.8e-19 98.6 146 44.5
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.1e-18 97.4 127 44.9
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 1.6e-17 93.6 129 41.9
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 4.5e-17 92.0 129 44.2
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 3.1e-10 69.3 129 33.3
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 1.2e-09 67.4 74 55.4
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.3e-08 63.9 178 29.2
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 3.8e-08 62.4 74 48.6
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 4.2e-07 58.9 74 47.3


User provided reference genes

Program Settings