Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 4.7e-137 491.5 304 100.0
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.5e-103 380.2 306 79.1
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 2.0e-100 369.8 308 73.7
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.5e-100 369.0 312 76.3
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.8e-100 367.9 304 70.4
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.1e-98 364.0 309 70.9
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.2e-94 349.7 317 69.4
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.2e-94 349.7 308 69.5
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-93 347.4 306 70.6
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 7.0e-93 344.7 315 67.6
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 3.5e-92 342.4 320 70.0
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 4.6e-92 342.0 304 73.0
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.0e-91 340.9 312 68.9
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.9e-90 336.7 307 68.4
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 3.3e-90 335.9 305 70.5
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.1e-89 333.2 324 64.5
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 6.2e-89 331.6 311 65.6
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.1e-88 330.9 318 69.8
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.4e-87 325.9 294 69.4
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 2.2e-86 323.2 307 66.8
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 4.9e-86 322.0 305 73.1
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 4.9e-86 322.0 305 73.4
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.9e-86 322.0 299 67.2
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.1e-85 320.9 304 70.1
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.1e-85 320.9 310 68.7
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.1e-85 320.9 293 69.6
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.4e-85 320.5 301 61.1
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.9e-85 320.1 307 70.0
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.9e-85 320.1 321 66.4
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 2.4e-85 319.7 301 64.1
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 5.4e-85 318.5 306 66.7
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.2e-84 317.4 305 62.3
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.1e-84 316.6 304 64.8
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.1e-84 316.6 304 64.8
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 4.6e-84 315.5 299 70.9
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.8e-84 314.7 320 61.2
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.3e-83 313.9 320 64.1
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.7e-83 313.5 320 61.2
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.3e-83 313.2 315 62.9
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.3e-83 313.2 305 60.7
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.3e-83 313.2 318 62.9
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.1e-82 310.8 302 65.2
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.9e-82 310.1 320 59.7
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.3e-82 309.3 319 58.3
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 4.3e-82 308.9 300 66.0
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 5.6e-82 308.5 321 60.7
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 7.3e-82 308.1 301 68.4
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 9.5e-82 307.8 305 63.6
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 6.2e-81 305.1 307 70.0
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 8.1e-81 304.7 311 67.5
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.3e-80 303.1 304 68.4
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 4.0e-80 302.4 318 68.2
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.8e-80 301.6 308 60.1
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 6.8e-80 301.6 306 64.1
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 3.4e-79 299.3 319 63.9
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 5.8e-79 298.5 297 63.0
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 5.8e-79 298.5 307 64.8
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.9e-79 297.7 305 65.2
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.7e-78 297.0 300 65.0
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.7e-78 297.0 308 64.9
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 2.9e-78 296.2 299 64.5
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 2.9e-78 296.2 323 56.7
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.7e-78 295.8 306 67.6
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 4.9e-78 295.4 305 63.3
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 6.4e-78 295.0 303 62.7
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 8.3e-78 294.7 315 63.8
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 8.3e-78 294.7 346 61.3
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 4.1e-77 292.4 304 67.4
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 7.1e-77 291.6 299 63.9
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 9.2e-77 291.2 301 64.5
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 9.2e-77 291.2 305 63.9
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.2e-76 290.8 304 61.2
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 2.1e-76 290.0 300 60.3
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.1e-76 290.0 284 68.7
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.7e-76 289.7 295 68.1
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 6.0e-76 288.5 316 67.7
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.3e-75 286.6 293 65.2
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 5.1e-75 285.4 313 62.3
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 8.6e-75 284.6 286 59.4
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.1e-74 284.3 302 63.2
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 4.3e-74 282.3 319 65.2
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 4.3e-74 282.3 300 64.7
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 5.6e-74 282.0 319 65.2
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 7.3e-74 281.6 317 64.7
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 7.3e-74 281.6 292 64.7
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 7.3e-74 281.6 297 58.9
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 7.3e-74 281.6 297 58.9
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 1.2e-73 280.8 295 64.1
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.2e-73 280.8 297 61.3
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.8e-73 279.6 319 63.0
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 2.8e-73 279.6 320 55.0
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.8e-72 276.9 302 68.2
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 2.0e-71 273.5 304 59.9
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 9.9e-71 271.2 319 62.1
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 9.9e-71 271.2 313 61.7
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.3e-70 270.8 315 63.5
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.1e-69 267.7 307 62.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.2e-69 266.2 315 60.0
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 5.4e-69 265.4 321 58.9
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 9.3e-69 264.6 303 61.4
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.6e-68 263.8 304 62.5
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.7e-68 263.1 308 62.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.7e-68 263.1 312 54.5
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 3.5e-68 262.7 417 46.3
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 6.0e-68 261.9 297 62.3
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 6.0e-68 261.9 305 61.6
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 6.0e-68 261.9 309 56.6
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.0e-67 259.6 315 56.5
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 8.1e-65 251.5 320 59.4
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 8.1e-65 251.5 301 60.5
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 8.1e-65 251.5 301 60.5
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.1e-64 251.1 313 62.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.4e-64 250.8 308 54.2
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 2.4e-64 250.0 256 63.7
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 4.0e-64 249.2 299 55.9
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 4.4e-63 245.7 311 56.3
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.1e-61 241.1 292 61.3
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-61 240.7 302 58.6
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 4.2e-61 239.2 309 60.5
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 7.1e-61 238.4 317 59.0
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 7.1e-61 238.4 298 57.0
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.2e-60 237.7 317 54.3
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.7e-60 236.5 305 55.4
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 3.5e-60 236.1 313 54.3
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 6.0e-60 235.3 300 59.0
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.3e-59 233.4 312 62.2
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.5e-58 230.7 308 53.2
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 7.3e-58 228.4 313 62.9
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 9.6e-58 228.0 231 66.2
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 2.1e-57 226.9 308 53.6
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.1e-56 224.6 319 55.8
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.8e-56 223.8 301 52.5
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.5e-55 220.7 298 53.4
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 3.4e-55 219.5 305 52.5
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 4.2e-53 212.6 303 49.8
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 6.0e-52 208.8 299 53.8
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 5.1e-51 205.7 294 48.3
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 1.1e-50 204.5 238 70.2
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.5e-50 204.1 215 67.4
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.9e-50 203.8 133 71.4
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 9.0e-48 194.9 279 54.1
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-47 194.1 318 45.6
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.6e-47 191.8 313 46.0
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 4.9e-46 189.1 217 65.0
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 8.4e-46 188.3 301 46.2
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.2e-45 186.4 211 58.3
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 8.7e-43 178.3 313 42.2
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.5e-42 177.6 142 66.2
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 7.4e-42 175.3 247 56.7
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.8e-41 173.3 133 66.2
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 5.5e-37 159.1 208 56.7
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 4.6e-36 156.0 102 75.5
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.5e-31 141.0 314 42.4
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.9e-30 136.7 211 55.0
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 3.2e-29 133.3 319 44.5
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.6e-28 131.0 179 59.2
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.3e-27 127.1 84 77.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 5.1e-27 125.9 99 60.6
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 3.3e-26 123.2 324 41.7
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 9.7e-26 121.7 78 82.1
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 3.7e-25 119.8 82 78.0
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.4e-24 117.9 305 44.6
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.8e-24 117.5 202 61.9
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.8e-24 117.5 113 60.2
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 3.1e-24 116.7 337 41.5
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 9.1e-24 115.2 88 70.5
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.2e-23 114.8 311 35.0
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 2.9e-22 110.2 79 65.8
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 6.1e-20 102.4 121 54.5
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.1e-20 102.4 152 42.1
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.7e-19 99.0 68 73.5
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.7e-19 99.0 63 76.2
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 4.1e-16 89.7 75 62.7
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 2.0e-15 87.4 83 61.4
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 6.5e-14 82.4 64 57.8
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 1.9e-13 80.9 293 46.1
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.2e-13 80.1 44 93.2
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.4e-13 78.6 91 52.7
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.6e-12 77.8 95 53.7
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.6e-10 70.5 79 55.7
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 5.9e-07 59.3 46 71.7
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.0e-06 58.5 115 41.7
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 2.2e-06 57.4 79 48.1
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 6.5e-06 55.8 270 42.6


User provided reference genes

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