Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 5.0e-232 807.4 400 100.0
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.8e-168 596.3 394 76.9
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 7.5e-151 537.7 390 66.9
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 5.7e-143 511.5 382 68.6
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 9.1e-141 504.2 382 66.5
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.6e-140 503.4 388 63.9
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 2.5e-138 496.1 387 63.3
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.4e-136 490.3 386 61.7
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 8.8e-136 487.6 391 65.2
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.2e-135 487.3 360 65.6
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.0e-135 486.5 360 65.6
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.6e-135 486.1 388 60.8
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.3e-134 483.8 388 61.3
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.7e-134 482.3 387 61.2
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 6.3e-134 481.5 386 62.7
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 3.1e-133 479.2 396 62.4
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 5.4e-133 478.4 388 61.9
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.6e-132 476.9 391 62.1
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 2.7e-132 476.1 388 60.6
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 3.8e-131 472.2 403 61.0
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.1e-130 470.7 408 58.6
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.2e-129 467.2 395 61.8
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 6.1e-129 464.9 391 60.1
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 3.0e-128 462.6 391 58.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 7.5e-127 458.0 385 59.2
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 1.7e-126 456.8 401 58.1
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 2.2e-126 456.4 390 60.8
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 6.4e-126 454.9 448 53.3
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.1e-125 454.1 388 57.2
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.8e-125 453.4 388 57.7
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.8e-125 453.4 391 59.3
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.8e-125 453.4 392 59.7
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.4e-125 453.0 391 60.9
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.4e-125 453.0 387 59.4
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 4.7e-121 438.7 490 50.4
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.0e-120 437.6 384 60.2
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.6e-119 433.0 389 55.3
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 2.6e-119 433.0 387 57.6
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 5.8e-119 431.8 332 61.4
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 2.9e-118 429.5 367 62.1
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 5.4e-117 425.2 467 48.8
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 2.7e-116 422.9 386 55.7
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 7.8e-116 421.4 387 53.0
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.7e-115 420.2 397 54.9
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 5.0e-115 418.7 388 55.2
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 6.6e-115 418.3 410 52.7
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.3e-114 416.0 386 55.7
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.6e-113 412.5 390 53.6
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 8.1e-113 411.4 497 45.9
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 2.2e-110 403.3 394 51.3
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 7.8e-108 394.8 410 51.7
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 7.8e-108 394.8 384 54.7
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.3e-107 394.0 384 50.5
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.3e-107 393.3 386 52.6
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 3.0e-107 392.9 391 51.4
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 3.0e-107 392.9 406 53.4
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.5e-106 389.8 387 51.9
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.5e-103 380.6 389 51.7
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 7.6e-103 378.3 393 54.2
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 9.9e-103 377.9 314 58.9
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.4e-101 373.2 367 51.2
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 9.2e-101 371.3 393 53.9
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 9.2e-101 371.3 369 50.9
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.7e-99 367.1 385 49.6
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 6.2e-97 358.6 368 50.5
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.1e-96 357.8 369 50.1
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.1e-96 357.8 369 50.1
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.4e-96 356.7 433 47.1
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 5.2e-96 355.5 369 49.9
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 6.0e-92 342.0 286 62.2
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.0e-91 341.3 286 62.9
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 5.1e-91 339.0 405 45.2
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 9.6e-90 334.7 229 70.3
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.1e-88 331.3 273 63.7
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.7e-86 323.9 318 56.9
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 7.1e-85 318.5 289 59.5
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 4.3e-82 309.3 371 47.4
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.6e-81 307.4 283 53.7
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 8.1e-81 305.1 390 43.3
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 6.9e-80 302.0 278 56.1
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 7.6e-79 298.5 385 42.6
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 6.4e-78 295.4 215 66.5
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 3.2e-77 293.1 286 54.9
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 7.1e-77 292.0 282 55.7
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.5e-74 284.3 287 55.1
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.8e-72 277.3 256 58.6
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.0e-71 273.9 257 55.3
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 2.0e-71 273.9 382 41.6
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.2e-70 270.4 262 56.1
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.1e-69 268.1 271 52.0
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.5e-69 266.9 259 55.6
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 5.5e-69 265.8 259 55.2
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 2.1e-68 263.8 215 59.1
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 5.1e-67 259.2 264 53.0
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 6.7e-67 258.8 242 57.9
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.9e-66 257.3 290 46.2
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 3.3e-66 256.5 274 52.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 4.3e-66 256.1 265 49.1
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.6e-63 246.9 259 51.4
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.4e-63 246.5 259 51.4
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.3e-62 244.6 259 51.0
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 4.2e-61 239.6 291 46.0
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.6e-60 236.5 244 52.9
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 6.7e-59 232.3 194 60.8
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 7.4e-58 228.8 242 49.6
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.4e-56 223.8 259 48.3
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 4.1e-56 223.0 286 45.8
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 6.9e-56 222.2 257 51.0
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.0e-54 218.4 252 53.6
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.7e-54 217.6 242 52.5
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.8e-54 216.5 256 48.8
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 9.4e-53 211.8 269 48.3
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.2e-52 211.5 255 48.2
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.8e-51 207.6 269 47.6
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.3e-51 207.2 255 47.1
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 3.0e-51 206.8 269 47.6
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 3.9e-51 206.5 212 50.9
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 8.8e-51 205.3 269 47.2
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.0e-50 204.1 264 46.6
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.6e-50 203.8 255 47.8
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 7.4e-50 202.2 206 53.9
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.3e-49 201.4 258 47.3
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 3.7e-49 199.9 259 47.5
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.7e-49 199.9 203 53.2
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.4e-48 197.2 255 47.1
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.1e-48 196.4 129 73.6
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.6e-47 193.7 213 48.8
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.6e-42 177.2 272 42.3
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.6e-42 177.2 213 45.5
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 9.7e-42 175.3 194 50.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.1e-40 171.8 281 38.1
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 2.2e-38 164.1 272 36.8
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.9e-37 161.0 172 48.3
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.7e-36 157.1 218 40.8
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 3.6e-36 156.8 128 63.3
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 7.7e-31 139.0 165 47.9
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 5.5e-29 132.9 72 79.2
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 3.6e-28 130.2 159 49.1
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 9.8e-26 122.1 64 76.6
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.3e-25 121.7 259 33.6
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.8e-20 104.0 120 50.8
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 3.6e-20 103.6 65 72.3
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 2.8e-17 94.0 122 45.1
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.3e-14 84.3 121 45.5
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 8.6e-14 82.4 138 39.1
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 1.0e-11 75.5 83 49.4
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 1.4e-11 75.1 113 45.1
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.0e-11 73.9 67 56.7
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 6.8e-11 72.8 179 32.4
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 5.7e-10 69.7 82 46.3
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 4.9e-09 66.6 78 46.2


User provided reference genes

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