Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 0.0e+00 1345.5 659 100.0
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 0.0e+00 1093.6 660 82.4
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 0.0e+00 1080.1 667 78.4
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 2.6e-310 1068.1 612 81.9
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 3.8e-309 1064.3 595 83.7
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 2.4e-308 1061.6 613 81.6
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 1.6e-307 1058.9 595 83.5
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 4.6e-307 1057.4 692 75.9
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.0e-306 1056.2 595 83.2
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 6.2e-304 1047.0 647 77.1
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 1.6e-299 1032.3 548 88.1
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 1.3e-298 1029.2 619 79.0
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 1.9e-297 1025.4 594 83.0
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 5.6e-297 1023.8 619 78.8
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 2.1e-296 1021.9 565 83.5
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 2.8e-296 1021.5 686 73.2
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 6.2e-296 1020.4 563 84.2
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 8.2e-296 1020.0 556 84.2
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 1.1e-295 1019.6 632 76.7
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 2.4e-295 1018.5 540 86.5
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 5.3e-295 1017.3 665 73.8
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 1.2e-294 1016.1 558 84.2
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 7.6e-294 1013.4 561 82.0
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 1.7e-293 1012.3 558 83.5
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 2.2e-293 1011.9 548 86.5
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 4.2e-292 1007.7 630 75.4
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 7.1e-292 1006.9 537 84.7
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 2.7e-291 1005.0 559 83.2
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 1.3e-290 1002.7 595 79.8
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 3.9e-290 1001.1 661 73.7
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 7.4e-289 996.9 537 85.3
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 2.4e-287 991.9 548 85.4
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 1.2e-286 989.6 579 79.8
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 5.0e-285 984.2 618 74.9
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 8.5e-285 983.4 582 79.6
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 8.5e-285 983.4 552 82.4
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 1.1e-284 983.0 543 83.2
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.4e-284 982.6 537 82.9
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 4.6e-283 977.6 653 72.0
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.4e-282 976.1 610 76.2
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.8e-282 975.7 610 76.2
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 1.8e-282 975.7 695 69.2
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 3.0e-282 974.9 724 67.0
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 1.5e-281 972.6 613 75.2
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 1.3e-280 969.5 549 80.5
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 4.8e-280 967.6 548 80.7
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 2.4e-279 965.3 577 76.8
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 4.1e-279 964.5 628 72.9
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 5.3e-279 964.1 624 73.6
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 1.2e-278 963.0 546 80.4
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 4.5e-278 961.1 583 75.8
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 5.9e-278 960.7 583 75.8
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 1.3e-277 959.5 660 69.7
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 2.9e-277 958.4 620 73.4
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 3.8e-277 958.0 830 61.4
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.1e-276 956.4 537 81.6
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 1.4e-276 956.1 645 70.9
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 1.9e-276 955.7 555 79.5
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 2.5e-276 955.3 554 79.8
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 4.2e-276 954.5 548 79.0
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 4.2e-276 954.5 548 79.0
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 5.5e-276 954.1 657 70.2
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 9.4e-276 953.4 540 81.1
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 9.4e-276 953.4 649 70.6
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 1.8e-274 949.1 572 75.9
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 3.0e-274 948.3 678 70.2
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 3.9e-274 948.0 665 69.2
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 4.4e-273 944.5 637 70.5
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 7.4e-273 943.7 551 80.0
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 4.8e-272 941.0 599 74.5
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 5.3e-271 937.6 558 77.4
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 1.2e-270 936.4 610 71.5
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 2.3e-266 922.2 511 83.0
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 8.8e-266 920.2 656 70.9
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 7.7e-262 907.1 565 74.5
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 6.5e-261 904.0 567 74.6
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 6.5e-261 904.0 514 78.4
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 5.5e-260 901.0 881 55.2
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 7.0e-255 884.0 549 75.6
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 5.0e-253 877.9 554 74.5
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 5.4e-247 857.8 566 70.3
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 9.1e-247 857.1 467 82.4
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 3.8e-245 851.7 468 82.5
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 2.1e-243 845.9 540 71.9
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 5.7e-241 837.8 634 65.1
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 6.3e-240 834.3 610 66.6
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 1.2e-233 813.5 562 68.5
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 8.6e-229 797.3 432 82.6
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 1.7e-224 783.1 506 71.3
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 6.9e-202 708.0 449 74.6
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 1.9e-191 673.3 369 82.7
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 3.5e-190 669.1 550 57.3
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 4.8e-187 658.7 436 69.7
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 2.6e-177 626.3 586 54.9
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 3.9e-173 612.5 450 64.7
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 2.0e-169 600.1 539 56.6
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 1.2e-166 590.9 575 51.5
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 4.8e-163 578.9 625 47.2
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 9.7e-156 554.7 357 72.5
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 7.7e-145 518.5 381 68.2
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 1.8e-122 444.1 442 54.1
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 5.2e-117 426.0 264 74.2
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 8.1e-102 375.6 202 81.2
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 2.9e-99 367.1 201 77.6
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 1.7e-88 331.3 180 87.8
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 1.3e-86 325.1 214 73.8
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 1.1e-79 302.0 172 76.7
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 5.8e-76 289.7 170 81.2
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 7.6e-76 289.3 174 78.7
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 3.0e-56 224.2 150 69.3
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.2e-54 216.1 119 81.5
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 6.1e-49 199.9 116 76.7
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.8e-48 196.1 106 88.7
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.8e-37 161.8 139 61.9
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.3e-35 155.6 127 63.8
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.4e-32 145.6 82 75.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 3.0e-32 144.4 110 67.3
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 5.9e-28 130.2 74 81.1
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-27 128.6 112 60.7
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-27 128.6 112 60.7
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.2e-18 97.4 78 64.1
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 4.4e-15 87.4 62 71.0
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 2.0e-12 78.6 51 66.7
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.0e-11 76.3 47 72.3
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 2.9e-11 74.7 41 85.4
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 3.3e-10 71.2 40 82.5
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 3.3e-10 71.2 40 82.5
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.7e-09 67.4 34 88.2
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 3.0e-08 64.7 42 66.7
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 4.4e-07 60.8 108 38.9


User provided reference genes

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