Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 9.6e-49 196.4 94 100.0
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 2.4e-23 112.1 76 71.1
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 7.6e-22 107.1 55 87.3
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 1.1e-20 103.2 55 83.6
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 1.0e-18 96.7 75 64.0
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 8.7e-18 93.6 63 69.8
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.9e-17 92.4 75 61.3
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 2.5e-17 92.0 75 61.3
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 4.3e-17 91.3 54 75.9
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 4.3e-17 91.3 57 73.7
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 1.6e-16 89.4 60 68.3
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.7e-16 88.2 56 75.0
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 4.8e-16 87.8 83 55.4
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 6.3e-16 87.4 54 75.9
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 6.3e-16 87.4 76 60.5
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 6.3e-16 87.4 73 61.6
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 8.2e-16 87.0 83 56.6
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.1e-15 86.7 57 70.2
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 1.4e-15 86.3 69 62.3
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 2.4e-15 85.5 57 70.2
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 2.4e-15 85.5 57 66.7
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 2.4e-15 85.5 60 65.0
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 2.4e-15 85.5 57 68.4
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 2.4e-15 85.5 83 54.2
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 4.1e-15 84.7 54 74.1
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 4.1e-15 84.7 54 74.1
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 4.1e-15 84.7 54 74.1
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 5.3e-15 84.3 55 70.9
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 5.3e-15 84.3 54 70.4
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 6.9e-15 84.0 54 72.2
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 6.9e-15 84.0 55 70.9
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 9.0e-15 83.6 54 72.2
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 9.0e-15 83.6 54 72.2
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 1.2e-14 83.2 54 72.2
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 1.2e-14 83.2 54 70.4
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 1.2e-14 83.2 54 70.4
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 1.5e-14 82.8 55 72.7
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 1.5e-14 82.8 55 72.7
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 1.5e-14 82.8 55 72.7
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 1.5e-14 82.8 55 72.7
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.5e-14 82.8 60 66.7
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 1.5e-14 82.8 54 68.5
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 2.0e-14 82.4 57 66.7
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 2.0e-14 82.4 57 66.7
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 2.6e-14 82.0 67 62.7
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 2.6e-14 82.0 54 68.5
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 3.4e-14 81.6 67 62.7
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 3.4e-14 81.6 55 70.9
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 3.4e-14 81.6 55 70.9
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 3.4e-14 81.6 83 54.2
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 3.4e-14 81.6 57 64.9
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 4.5e-14 81.3 54 72.2
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 4.5e-14 81.3 54 70.4
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 5.9e-14 80.9 54 68.5
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 5.9e-14 80.9 65 63.1
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 7.7e-14 80.5 54 70.4
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 7.7e-14 80.5 57 64.9
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 7.7e-14 80.5 57 63.2
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 7.7e-14 80.5 65 64.6
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 7.7e-14 80.5 54 66.7
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.0e-13 80.1 57 66.7
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 1.0e-13 80.1 63 63.5
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 1.0e-13 80.1 54 68.5
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 1.3e-13 79.7 56 67.9
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 1.3e-13 79.7 64 65.6
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 1.3e-13 79.7 55 67.3
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 1.7e-13 79.3 55 69.1
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 1.7e-13 79.3 63 60.3
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 2.2e-13 79.0 52 71.2
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.2e-13 79.0 56 67.9
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 2.2e-13 79.0 57 63.2
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 2.2e-13 79.0 57 63.2
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 2.2e-13 79.0 64 64.1
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 2.9e-13 78.6 55 69.1
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 2.9e-13 78.6 57 64.9
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 3.8e-13 78.2 52 71.2
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 3.8e-13 78.2 55 69.1
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 5.0e-13 77.8 65 63.1
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 5.0e-13 77.8 54 66.7
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 6.5e-13 77.4 57 64.9
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 6.5e-13 77.4 65 61.5
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 6.5e-13 77.4 54 66.7
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 6.5e-13 77.4 55 65.5
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 8.5e-13 77.0 55 67.3
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 8.5e-13 77.0 54 68.5
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 8.5e-13 77.0 54 68.5
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 8.5e-13 77.0 54 66.7
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 8.5e-13 77.0 65 61.5
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 1.1e-12 76.6 54 66.7
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 1.1e-12 76.6 54 64.8
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 1.9e-12 75.9 65 61.5
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 1.9e-12 75.9 55 67.3
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 1.9e-12 75.9 55 61.8
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 2.5e-12 75.5 65 58.5
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 3.2e-12 75.1 57 61.4
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 3.2e-12 75.1 52 69.2
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 4.2e-12 74.7 54 66.7
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 4.2e-12 74.7 65 60.0
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 5.5e-12 74.3 55 65.5
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 7.2e-12 73.9 55 60.0
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 9.4e-12 73.6 55 67.3
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 9.4e-12 73.6 57 61.4
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 9.4e-12 73.6 54 64.8
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 1.6e-11 72.8 57 59.6
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 2.7e-11 72.0 54 61.1
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.7e-11 72.0 57 64.9
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 2.7e-11 72.0 51 64.7
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 3.6e-11 71.6 54 61.1
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 3.6e-11 71.6 60 58.3
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 4.6e-11 71.2 57 61.4
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 4.6e-11 71.2 57 61.4
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 7.9e-11 70.5 49 65.3
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.3e-10 68.9 66 54.5
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 3.9e-10 68.2 56 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 7.4e-09 63.9 83 43.4
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 2.4e-07 58.9 74 40.5
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 4.1e-07 58.2 54 59.3
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 1.2e-06 56.6 55 49.1
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 4.5e-06 54.7 76 42.1


User provided reference genes

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