Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 0.0e+00 1217.6 624 100.0
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 6.2e-237 824.3 675 66.4
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.5e-198 696.8 695 57.1
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-198 696.0 695 55.8
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.0e-194 684.1 661 58.2
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.5e-185 653.7 629 57.1
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.4e-182 642.5 682 54.1
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.4e-174 615.9 695 52.8
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.7e-173 613.6 679 51.5
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.0e-172 608.2 719 51.0
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.1e-161 574.3 631 53.4
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 9.5e-161 571.2 647 50.9
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.8e-160 569.7 631 50.9
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.2e-155 554.3 693 48.1
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 7.8e-155 551.6 634 49.5
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.6e-150 536.6 631 50.9
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 8.1e-144 515.0 660 47.0
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.8e-143 513.8 627 47.2
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.6e-142 510.0 626 47.6
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 3.3e-137 493.0 628 46.3
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 9.6e-137 491.5 640 45.9
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 3.6e-136 489.6 630 47.9
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.4e-135 487.6 628 46.7
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.4e-135 486.9 672 43.8
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.5e-134 484.2 641 46.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 2.6e-134 483.4 632 47.3
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.2e-133 480.3 630 46.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 2.9e-133 479.9 611 45.0
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.8e-133 479.6 626 44.6
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 5.4e-132 475.7 653 43.5
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 1.2e-131 474.6 611 44.8
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.7e-131 473.4 627 46.1
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 2.7e-131 473.4 626 46.0
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.3e-129 466.1 626 43.1
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.6e-128 464.2 746 39.3
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 3.1e-127 459.9 610 43.9
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 6.4e-125 452.2 698 41.3
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.4e-124 451.1 596 44.1
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.9e-124 450.7 630 44.1
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.4e-124 450.3 568 46.1
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.4e-124 450.3 650 42.5
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 3.2e-124 449.9 628 45.7
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.2e-124 449.9 613 45.2
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 3.5e-123 446.4 446 54.0
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.6e-121 438.3 636 43.1
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.6e-120 437.6 631 42.9
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.1e-119 433.3 427 51.8
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 3.1e-119 433.3 748 39.7
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 4.0e-119 433.0 590 43.1
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.7e-117 427.6 800 36.0
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.4e-116 422.5 631 42.6
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.5e-113 414.5 623 41.7
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.6e-112 411.0 635 41.3
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.6e-110 403.7 610 41.8
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 6.5e-109 399.1 584 43.8
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 1.8e-106 391.0 573 41.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.1e-104 384.0 736 38.2
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.2e-104 382.1 651 37.8
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.2e-102 378.3 778 35.3
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.2e-101 374.0 776 34.7
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 2.2e-96 357.5 273 65.6
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.4e-95 354.0 319 57.4
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 6.9e-95 352.4 668 37.0
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.9e-93 347.1 326 55.5
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 3.8e-93 346.7 630 37.6
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.1e-92 345.1 732 35.2
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.9e-92 344.4 730 35.3
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 9.4e-92 342.0 439 45.1
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.7e-91 340.5 312 56.7
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.4e-90 338.2 312 56.7
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.1e-89 335.1 631 37.1
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.3e-88 331.6 623 38.5
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.2e-86 325.1 630 36.0
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 3.4e-86 323.6 313 56.5
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 5.0e-85 319.7 633 36.2
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 6.5e-85 319.3 623 37.6
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 8.5e-85 318.9 634 36.0
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 8.5e-85 318.9 650 35.8
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 1.4e-84 318.2 654 34.9
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.6e-83 314.7 626 34.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 4.7e-83 313.2 630 35.2
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.0e-82 312.0 621 36.2
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 1.4e-82 311.6 349 49.0
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.3e-82 310.8 306 53.6
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 3.0e-82 310.5 614 36.2
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.0e-82 310.5 651 34.1
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 5.1e-82 309.7 343 48.7
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.5e-81 308.1 378 46.6
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 4.4e-81 306.6 631 34.9
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 7.4e-81 305.8 630 34.8
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 7.4e-81 305.8 714 34.9
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 2.8e-80 303.9 629 34.7
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.1e-79 300.1 311 51.1
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.3e-79 299.7 623 35.3
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.1e-79 298.9 573 37.0
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.7e-77 294.7 630 34.8
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 2.2e-77 294.3 402 43.3
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-77 293.9 358 46.1
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-76 292.0 604 35.4
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 4.2e-76 290.0 630 33.8
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 4.2e-76 290.0 730 32.6
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.0e-74 283.9 337 47.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.8e-72 277.3 361 43.2
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 4.8e-72 276.6 308 51.0
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.0e-69 268.9 267 53.9
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 5.0e-69 266.5 283 50.2
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 6.5e-69 266.2 304 48.0
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.5e-68 263.1 338 43.2
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 9.4e-68 262.3 641 33.4
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-66 258.5 224 58.5
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.5e-65 255.0 587 34.4
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.1e-63 248.8 777 26.9
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.4e-63 248.4 655 30.5
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 2.4e-63 247.7 428 38.6
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 2.9e-61 240.7 645 31.5
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.7e-59 234.2 268 49.6
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 8.0e-59 232.6 305 48.5
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 5.7e-57 226.5 219 53.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.1e-55 222.2 377 39.3
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-54 217.6 293 43.0
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.0e-50 205.7 307 39.1
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.3e-48 198.7 759 26.6
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 5.6e-44 183.3 633 27.6
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 4.0e-42 177.2 183 50.3
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 6.4e-40 169.9 494 29.6
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-39 169.1 188 47.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-39 169.1 188 47.9
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.1e-36 159.1 551 29.4
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 1.1e-34 152.5 339 35.4
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.3e-34 151.4 295 39.3
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.2e-32 144.8 311 31.5
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.9e-31 141.7 228 39.5
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.3e-29 134.8 529 27.4
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.1e-28 132.5 225 36.9
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.0e-26 124.0 168 45.8
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.5e-25 122.1 129 48.8
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 2.9e-24 117.9 121 49.6
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 2.3e-21 108.2 173 38.2
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 2.4e-18 98.2 77 61.0
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 6.6e-13 80.1 69 58.0
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 8.7e-13 79.7 128 35.2
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 1.6e-11 75.5 127 36.2
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 2.8e-11 74.7 108 42.6
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 4.8e-11 73.9 131 36.6
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 4.8e-11 73.9 127 36.2
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 5.3e-10 70.5 131 35.9
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 6.9e-10 70.1 112 39.3
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-09 68.2 61 57.4
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 3.4e-09 67.8 131 35.1
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 3.4e-09 67.8 105 41.9
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 1.3e-08 65.9 148 32.4
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-08 64.7 60 56.7
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 3.8e-08 64.3 112 36.6
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 2.4e-07 61.6 60 55.0
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 7.1e-07 60.1 73 46.6


User provided reference genes

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