Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 0.0e+00 1090.5 572 100.0
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 3.8e-116 422.9 439 59.7
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 5.2e-65 253.1 298 51.7
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 2.0e-64 251.1 568 36.1
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 2.9e-63 247.3 298 50.7
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.4e-62 244.2 304 50.7
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 6.0e-61 239.6 582 34.0
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 4.0e-57 226.9 548 34.9
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 6.4e-55 219.5 555 35.1
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.9e-54 218.0 554 34.5
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.5e-51 208.4 546 35.9
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 4.3e-51 206.8 246 48.8
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 7.3e-51 206.1 486 35.0
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 7.3e-51 206.1 543 36.5
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 3.6e-50 203.8 411 41.6
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 9.0e-49 199.1 408 38.7
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 9.9e-48 195.7 535 34.0
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 9.3e-46 189.1 398 36.7
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.2e-45 188.7 541 35.3
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.0e-44 185.7 265 44.2
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 2.3e-44 184.5 555 33.3
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 5.1e-44 183.3 517 33.1
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 3.3e-43 180.6 255 44.7
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.8e-41 174.9 344 38.7
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 2.4e-41 174.5 554 34.1
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.2e-39 167.9 402 38.1
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 4.9e-39 166.8 401 36.4
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.4e-38 165.2 488 34.8
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 1.8e-36 158.3 175 49.1
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.8e-36 158.3 403 34.5
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 4.3e-35 153.7 298 38.3
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 7.4e-35 152.9 517 32.7
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.2e-32 145.6 314 36.3
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.5e-32 145.2 299 38.1
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 2.0e-32 144.8 172 50.6
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 5.8e-32 143.3 549 30.8
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.0e-31 142.5 281 35.9
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.0e-31 142.5 281 35.9
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.0e-31 142.5 281 35.9
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 1.4e-30 138.7 248 39.5
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 1.9e-30 138.3 78 83.3
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.6e-29 135.2 342 35.1
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 4.6e-29 133.7 261 36.4
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 6.1e-29 133.3 257 38.9
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.5e-27 128.6 248 36.3
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 5.7e-27 126.7 250 37.2
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 7.4e-27 126.3 249 38.6
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 9.7e-27 125.9 167 44.3
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 1.3e-26 125.6 344 33.7
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 2.8e-26 124.4 206 42.7
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 2.8e-26 124.4 271 36.2
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 6.3e-26 123.2 217 35.5
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 6.3e-26 123.2 428 30.8
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 1.8e-25 121.7 247 38.5
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 2.4e-25 121.3 243 36.2
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.4e-25 121.3 247 37.2
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 5.3e-25 120.2 287 35.5
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 6.9e-25 119.8 179 42.5
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 9.0e-25 119.4 297 35.7
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 9.0e-25 119.4 209 36.8
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 2.6e-24 117.9 275 35.6
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 4.5e-24 117.1 279 35.1
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 7.7e-24 116.3 489 27.8
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.0e-23 115.9 347 31.1
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.3e-23 115.5 254 35.8
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 2.9e-23 114.4 396 30.6
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 6.5e-23 113.2 160 44.4
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 6.5e-23 113.2 252 35.3
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.9e-22 111.7 165 43.0
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 2.5e-22 111.3 451 29.9
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 9.4e-22 109.4 325 28.9
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.2e-21 109.0 250 34.0
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.7e-21 107.8 382 30.9
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 1.0e-20 105.9 466 29.4
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 1.8e-20 105.1 454 27.5
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 8.8e-20 102.8 448 29.0
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.0e-19 101.7 386 31.6
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 2.5e-19 101.3 284 31.0
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.7e-18 98.6 295 31.9
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 2.8e-18 97.8 162 40.7
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 3.7e-18 97.4 509 26.9
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 6.3e-18 96.7 212 36.3
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 6.3e-18 96.7 180 40.0
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 1.1e-17 95.9 189 33.9
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 1.4e-17 95.5 225 30.7
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.8e-17 95.1 313 29.4
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 4.1e-17 94.0 444 26.1
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 4.1e-17 94.0 362 27.9
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 5.3e-17 93.6 250 32.0
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.0e-16 91.7 365 28.5
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 2.6e-16 91.3 224 31.2
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 3.4e-16 90.9 373 27.9
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 1.0e-15 89.4 369 28.5
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.3e-15 89.0 271 29.9
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 2.2e-15 88.2 417 26.6
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 2.9e-15 87.8 309 29.8
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 2.9e-15 87.8 108 49.1
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 3.8e-15 87.4 347 28.2
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 5.0e-15 87.0 360 26.7
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 5.0e-15 87.0 138 38.4
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.9e-14 85.1 170 36.5
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 3.2e-14 84.3 81 53.1
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 4.2e-14 84.0 102 46.1
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 5.5e-14 83.6 366 27.3
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 5.5e-14 83.6 412 26.9
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 9.4e-14 82.8 43 88.4
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.1e-13 81.6 210 31.9
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 2.7e-13 81.3 386 26.7
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 2.7e-13 81.3 371 26.7
MD16G1211800 Malus domestica HOM05D000074 ORTHO05D005145 4.7e-13 80.5 103 48.5
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.3e-12 78.2 63 60.3
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 2.3e-12 78.2 72 50.0
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 8.8e-12 76.3 178 34.3
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 4.4e-11 73.9 90 48.9
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 5.7e-11 73.6 159 34.0
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 9.7e-11 72.8 42 81.0
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 8.2e-10 69.7 166 30.1
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 8.2e-10 69.7 93 45.2
CARHR137580 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.1e-09 69.3 400 25.5
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 1.1e-09 69.3 471 24.2
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.8e-09 68.6 159 33.3
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 7.0e-09 66.6 183 29.5
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.0e-08 65.1 68 52.9
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 2.6e-08 64.7 226 29.6
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 7.7e-08 63.2 304 26.0
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 2.9e-07 61.2 41 65.9
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 2.9e-07 61.2 207 31.9
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.1e-06 59.3 399 23.6
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 1.1e-06 59.3 61 47.5
Lalb_Chr02g0144301 Lupinus albus HOM05D004311 ORTHO05D005145 1.5e-06 58.9 180 30.0
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 1.9e-06 58.5 61 47.5
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 4.2e-06 57.4 260 26.9
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 7.2e-06 56.6 144 31.9


User provided reference genes

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