Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G187000 Prunus persica HOM05D001170 ORTHO05D335647 7.9e-49 196.8 101 100.0
Prupe.1G187400 Prunus persica HOM05D001170 ORTHO05D006602 1.8e-24 115.9 71 87.3
MD00G1095700 Malus domestica HOM05D001170 ORTHO05D006602 5.9e-20 100.9 137 52.6
MD05G1313900 Malus domestica HOM05D001170 ORTHO05D006602 2.9e-19 98.6 137 53.3
Prupe.4G045800 Prunus persica HOM05D001170 ORTHO05D006602 8.5e-19 97.1 137 51.8
ClCG01G022920 Citrullus lanatus HOM05D001170 ORTHO05D006602 7.2e-18 94.0 130 49.2
Haze_06482 Corylus avellana HOM05D001170 ORTHO05D006602 1.2e-17 93.2 137 50.4
Dinv07552 Davidia involucrata HOM05D001170 ORTHO05D006602 1.6e-17 92.8 121 52.1
TWI38G1622 Tripterygium wilfordii HOM05D001170 ORTHO05D006602 2.7e-17 92.0 137 48.2
SalBow8G0859 Salvia bowleyana HOM05D001170 ORTHO05D006602 4.7e-17 91.3 136 47.8
Migut.M01149 Erythranthe guttata HOM05D001170 ORTHO05D006602 7.9e-17 90.5 136 48.5
Sabra11G0035400 Salix brachista HOM05D001170 ORTHO05D006602 1.0e-16 90.1 137 47.4
Duzib235G1347 Durio zibethinus HOM05D001170 ORTHO05D006602 1.4e-16 89.7 89 60.7
Medtr4g088905 Medicago truncatula HOM05D001170 ORTHO05D006602 1.8e-16 89.4 137 47.4
Nitab4.5_0002158g0110 Nicotiana tabacum HOM05D001170 ORTHO05D006602 2.3e-16 89.0 136 47.8
Nitab4.5_0004411g0040 Nicotiana tabacum HOM05D001170 ORTHO05D006602 2.3e-16 89.0 136 47.8
CSS0009287 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D006602 3.0e-16 88.6 137 48.2
CSS0049641 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D006602 3.0e-16 88.6 137 48.2
Lj4g0016173 Lotus japonicus HOM05D001170 ORTHO05D006602 3.0e-16 88.6 130 49.2
Dinv40547 Davidia involucrata HOM05D001170 ORTHO05D006602 3.9e-16 88.2 121 51.2
Actinidia01886 Actinidia chinensis HOM05D001170 ORTHO05D006602 6.7e-16 87.4 137 46.7
Glyma.13G180400 Glycine max HOM05D001170 ORTHO05D006602 8.8e-16 87.0 137 47.4
RcHm_v2.0_Chr5g0008221 Rosa chinensis HOM05D001170 ORTHO05D006602 8.8e-16 87.0 136 46.3
TWI38G1016 Tripterygium wilfordii HOM05D001170 ORTHO05D006602 8.8e-16 87.0 121 49.6
FAN11G2442 Fragaria x ananassa HOM05D001170 ORTHO05D006602 2.0e-15 85.9 136 45.6
Potri.004G042200 Populus trichocarpa HOM05D001170 ORTHO05D006602 2.0e-15 85.9 121 47.9
CsaV3_6G050090 Cucumis sativus L. HOM05D001170 ORTHO05D006602 2.6e-15 85.5 137 44.5
FAN16G0881 Fragaria x ananassa HOM05D001170 ORTHO05D006602 2.6e-15 85.5 129 47.3
Eucgr.D00629 Eucalyptus grandis HOM05D001170 ORTHO05D006602 3.3e-15 85.1 137 46.0
FvH4_3g09370 Fragaria vesca HOM05D001170 ORTHO05D006602 3.3e-15 85.1 136 45.6
Psat7g114400 Pisum sativum HOM05D001170 ORTHO05D006602 3.3e-15 85.1 137 46.0
PGR004G2504 Punica granatum HOM05D001170 ORTHO05D006602 3.3e-15 85.1 137 45.3
Potri.011G051400 Populus trichocarpa HOM05D001170 ORTHO05D006602 4.4e-15 84.7 135 45.9
QL05p040001 Quercus lobata HOM05D001170 ORTHO05D006602 4.4e-15 84.7 137 48.2
QL12p006383 Quercus lobata HOM05D001170 ORTHO05D006602 4.4e-15 84.7 137 48.2
Lalb_Chr05g0218421 Lupinus albus HOM05D001170 ORTHO05D006602 5.7e-15 84.3 137 45.3
Solyc02g078360.4 Solanum lycopersicum HOM05D001170 ORTHO05D006602 5.7e-15 84.3 120 48.3
Sopen02g023220 Solanum pennellii HOM05D001170 ORTHO05D006602 5.7e-15 84.3 120 48.3
CANSAT80G1846 Cannabis sativa HOM05D001170 ORTHO05D006602 7.4e-15 84.0 121 48.8
Cfa000433 Carpinus fangiana HOM05D001170 ORTHO05D006602 7.4e-15 84.0 105 52.4
Ciclev10015059m.g Citrus clementina HOM05D001170 ORTHO05D006602 7.4e-15 84.0 130 46.2
Lsat_1_v5_gn_7_21060 Lactuca sativa HOM05D001170 ORTHO05D006602 7.4e-15 84.0 89 57.3
Phvul.002G228300 Phaseolus vulgaris HOM05D001170 ORTHO05D006602 7.4e-15 84.0 130 45.4
Hund21229 Selenicereus undatus HOM05D001170 ORTHO05D006602 7.4e-15 84.0 136 47.1
FAN21G0582 Fragaria x ananassa HOM05D001170 ORTHO05D006602 9.7e-15 83.6 136 44.1
Manes.16G026500 Manihot esculenta HOM05D001170 ORTHO05D006602 9.7e-15 83.6 137 45.3
TPR.G12036 Trifolium pratense HOM05D001170 ORTHO05D006602 9.7e-15 83.6 137 45.3
arahy.Tifrunner.gnm1.ann1.4SZ21F Arachis hypogaea HOM05D001170 ORTHO05D006602 1.3e-14 83.2 129 47.3
arahy.Tifrunner.gnm1.ann1.NX47XU Arachis hypogaea HOM05D001170 ORTHO05D006602 1.3e-14 83.2 129 47.3
VMungo0251G3057 Vigna mungo HOM05D001170 ORTHO05D006602 1.3e-14 83.2 130 46.2
Oeu016099.1 Olea europaea HOM05D001170 ORTHO05D006602 2.2e-14 82.4 105 51.4
Sed0020397 Sechium edule HOM05D001170 ORTHO05D006602 2.2e-14 82.4 130 45.4
Duzib192G0182 Durio zibethinus HOM05D001170 ORTHO05D006602 2.8e-14 82.0 136 46.3
Actinidia05624 Actinidia chinensis HOM05D001170 ORTHO05D006602 3.7e-14 81.6 137 44.5
COL.COLO4_31488 Corchorus olitorius HOM05D001170 ORTHO05D006602 4.8e-14 81.3 120 48.3
Gorai.011G027200 Gossypium raimondii HOM05D001170 ORTHO05D006602 4.8e-14 81.3 136 45.6
HanXRQChr04g0124081 Helianthus annuus HOM05D001170 ORTHO05D006602 6.3e-14 80.9 89 53.9
CSS0013622 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D006602 8.2e-14 80.5 126 46.0
CiPaw.10G047600 Carya illinoinensis HOM05D001170 ORTHO05D006602 8.2e-14 80.5 122 48.4
Gohir.D10G025900 Gossypium hirsutum HOM05D001170 ORTHO05D006602 1.1e-13 80.1 136 45.6
Nn1g04056 Nelumbo nucifera HOM05D001170 ORTHO05D006602 1.1e-13 80.1 130 45.4
Thecc.06G189200 Theobroma cacao HOM05D001170 ORTHO05D006602 1.1e-13 80.1 105 50.5
Cc02_g13250 Coffea canephora HOM05D001170 ORTHO05D006602 1.4e-13 79.7 98 53.1
Cpa.g.sc27.48 Carica papaya HOM05D001170 ORTHO05D006602 1.8e-13 79.3 137 43.8
Ca_18539_v3 Cicer arietinum L. HOM05D001170 ORTHO05D006602 1.8e-13 79.3 110 48.2
DCAR_004078 Daucus carota HOM05D001170 ORTHO05D006602 1.8e-13 79.3 120 46.7
Hma1.2p1_0126F.1_g059340 Hydrangea macrophylla HOM05D001170 ORTHO05D006602 1.8e-13 79.3 121 49.6
Peaxi162Scf00947g00115 Petunia axillaris HOM05D001170 ORTHO05D006602 1.8e-13 79.3 105 48.6
AUR62014807 Chenopodium quinoa HOM05D001170 ORTHO05D006602 2.4e-13 79.0 98 51.0
TAR629G2507 Trochodendron aralioides HOM05D001170 ORTHO05D006602 2.4e-13 79.0 137 45.3
CAN.G1164.19 Capsicum annuum HOM05D001170 ORTHO05D006602 4.1e-13 78.2 105 48.6
SGA_v2.0_scaffold100G29673 Striga asiatica HOM05D001170 ORTHO05D006602 7.0e-13 77.4 81 58.0
Atru.chr10.1898 Acer truncatum HOM05D001170 ORTHO05D006602 9.1e-13 77.0 120 46.7
EL10Ac8g20369 Beta vulgaris HOM05D001170 ORTHO05D006602 9.1e-13 77.0 105 49.5
Sc24g0000960 Simmondsia chinensis HOM05D001170 ORTHO05D006602 1.2e-12 76.6 89 52.8
THA.LOC104806287 Tarenaya hassleriana HOM05D001170 ORTHO05D006602 1.2e-12 76.6 137 43.8
A03p30250 Brassica napus HOM05D001170 ORTHO05D006602 1.6e-12 76.3 121 45.5
AUR62016999 Chenopodium quinoa HOM05D001170 ORTHO05D006602 1.6e-12 76.3 98 50.0
Gohir.A10G025200 Gossypium hirsutum HOM05D001170 ORTHO05D006602 1.6e-12 76.3 105 49.5
Lj2A397T24 Lonicera japonica HOM05D001170 ORTHO05D006602 2.6e-12 75.5 79 58.2
Oeu050843.2 Olea europaea HOM05D001170 ORTHO05D006602 2.6e-12 75.5 78 59.0
A09p25960 Brassica napus HOM05D001170 ORTHO05D006602 3.5e-12 75.1 121 44.6
BraA09t38163Z Brassica rapa HOM05D001170 ORTHO05D006602 3.5e-12 75.1 121 44.6
Rhsim13G0177000 Rhododendron simsii HOM05D001170 ORTHO05D006602 3.5e-12 75.1 73 58.9
C03p36500 Brassica napus HOM05D001170 ORTHO05D006602 4.5e-12 74.7 121 44.6
Aqoxy4G00926 Aquilegia oxysepala HOM05D001170 ORTHO05D006602 5.9e-12 74.3 139 40.3
BcaC09g51498 Brassica carinata HOM05D001170 ORTHO05D006602 5.9e-12 74.3 121 44.6
BolC3t15963H Brassica oleracea HOM05D001170 ORTHO05D006602 5.9e-12 74.3 121 44.6
CSS0022827 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D006602 5.9e-12 74.3 121 46.3
Carub.0006s3288 Capsella rubella HOM05D001170 ORTHO05D006602 1.0e-11 73.6 85 51.8
Thhalv10028614m.g Eutrema salsugineum HOM05D001170 ORTHO05D006602 1.3e-11 73.2 121 43.8
CARHR252590 Cardamine hirsuta HOM05D001170 ORTHO05D006602 1.7e-11 72.8 85 51.8
Sp6g04010 Schrenkiella parvula HOM05D001170 ORTHO05D006602 1.7e-11 72.8 121 43.0
Ah.14g089410 Amaranthus hybridus HOM05D001170 ORTHO05D006602 2.2e-11 72.4 105 47.6
AL6G48460 Arabidopsis lyrata HOM05D001170 ORTHO05D006602 2.2e-11 72.4 85 51.8
AT4G04950 Arabidopsis thaliana HOM05D001170 ORTHO05D006602 2.2e-11 72.4 85 51.8
CDE04G1642 Ceratophyllum demersum HOM05D001170 ORTHO05D006602 2.2e-11 72.4 137 41.6
THA.LOC104812862 Tarenaya hassleriana HOM05D001170 ORTHO05D006602 2.2e-11 72.4 134 44.0
ECA236G1805 Erigeron canadensis HOM05D001170 ORTHO05D006602 2.9e-11 72.0 89 50.6
Aa31LG9G9540 Aethionema arabicum HOM05D001170 ORTHO05D006602 3.8e-11 71.6 121 43.8
PSO675G1931 Papaver somniferum HOM05D001170 ORTHO05D006602 5.0e-11 71.2 137 42.3
Lj1A1206T69 Lonicera japonica HOM05D001170 ORTHO05D006602 8.5e-11 70.5 89 50.6
Zm00001eb044380 Zea mays HOM05D001170 ORTHO05D006602 8.5e-11 70.5 129 41.9
BcaC04g21350 Brassica carinata HOM05D001170 ORTHO05D006602 1.1e-10 70.1 134 41.0
C09p32900 Brassica napus HOM05D001170 ORTHO05D006602 1.1e-10 70.1 134 41.0
BolC9t56125H Brassica oleracea HOM05D001170 ORTHO05D006602 1.1e-10 70.1 134 41.0
PSO541G1004 Papaver somniferum HOM05D001170 ORTHO05D006602 1.1e-10 70.1 137 43.1
Os10g0500700 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D006602 3.2e-10 68.6 98 44.9
Zm00001eb220880 Zea mays HOM05D001170 ORTHO05D006602 3.2e-10 68.6 136 40.4
SHI01782 Sapria himalayana HOM05D001170 ORTHO05D006602 4.2e-10 68.2 81 49.4
unitig_22.g6228 Utricularia gibba HOM05D001170 ORTHO05D006602 1.2e-09 66.6 80 52.5
BcaB01g01849 Brassica carinata HOM05D001170 ORTHO05D006602 2.1e-09 65.9 132 39.4
AT4G32580 Arabidopsis thaliana HOM05D001170 ORTHO05D006602 3.6e-09 65.1 95 46.3
CiPaw.09G058800 Carya illinoinensis HOM05D001170 ORTHO05D006602 8.0e-09 63.9 137 42.3
HPP92_022713 Vanilla planifolia HOM05D001170 ORTHO05D006602 4.0e-08 61.6 98 42.9
BraA03t12209Z Brassica rapa HOM05D001170 ORTHO05D006602 1.5e-07 59.7 156 34.6
TAR627G0846 Trochodendron aralioides HOM05D001170 ORTHO05D006602 1.7e-06 56.2 63 50.8


User provided reference genes

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