Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 4.3e-119 431.4 229 100.0
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 2.2e-91 339.3 230 79.1
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.4e-90 336.7 230 77.8
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 9.4e-90 334.0 230 77.0
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 1.2e-89 333.6 229 81.2
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 1.6e-89 333.2 228 75.4
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 7.4e-87 324.3 230 76.1
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 7.7e-84 314.3 247 68.0
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 8.5e-83 310.8 195 85.6
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 3.2e-82 308.9 227 72.2
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 1.0e-80 303.9 227 71.4
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 2.3e-80 302.8 229 69.9
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 1.3e-78 297.0 229 70.3
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 2.2e-78 296.2 228 69.3
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.8e-78 295.8 217 74.2
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 6.3e-78 294.7 229 69.9
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 2.4e-77 292.7 229 69.9
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 3.1e-77 292.4 228 69.3
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 9.1e-77 290.8 232 69.4
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 1.2e-76 290.4 229 68.6
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 2.2e-75 286.2 228 68.0
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 2.2e-75 286.2 228 66.7
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 2.3e-72 276.2 242 63.2
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 5.2e-72 275.0 228 65.4
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.5e-71 273.5 227 66.1
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 2.0e-71 273.1 228 64.0
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 2.6e-71 272.7 247 62.3
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.3e-70 270.4 249 58.6
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 3.7e-70 268.9 230 67.0
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 4.8e-70 268.5 296 54.7
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 6.3e-70 268.1 203 70.4
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.1e-69 267.3 249 57.8
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 1.1e-69 267.3 245 60.8
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 1.1e-69 267.3 215 65.6
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 4.1e-69 265.4 249 58.6
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 3.5e-68 262.3 233 60.5
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 5.9e-68 261.5 230 61.7
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 5.9e-68 261.5 176 81.2
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 7.7e-68 261.2 225 63.6
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 1.3e-67 260.4 228 64.5
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 5.0e-67 258.5 230 63.0
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.5e-66 256.9 233 60.5
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 1.5e-66 256.9 233 61.8
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.9e-66 256.5 233 60.1
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 1.6e-65 253.4 240 58.8
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 2.7e-65 252.7 249 54.6
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 3.6e-65 252.3 230 60.0
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.4e-64 250.4 236 60.6
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 4.0e-64 248.8 255 55.7
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 8.8e-64 247.7 255 55.3
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 1.2e-63 247.3 233 57.9
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 2.6e-63 246.1 241 57.7
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 7.5e-63 244.6 236 59.3
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 1.3e-62 243.8 229 58.1
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 6.3e-62 241.5 240 57.9
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 6.3e-62 241.5 256 54.3
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 1.4e-61 240.4 240 55.4
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 1.8e-61 240.0 194 69.1
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 2.4e-61 239.6 240 57.9
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 2.4e-61 239.6 240 55.4
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 1.6e-60 236.9 241 56.0
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 2.0e-60 236.5 233 59.2
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 1.0e-59 234.2 227 59.9
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 1.3e-59 233.8 245 55.1
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 2.9e-59 232.6 255 51.8
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 2.9e-59 232.6 195 67.2
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 3.8e-59 232.3 240 56.7
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 8.5e-59 231.1 227 58.6
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 1.5e-58 230.3 202 62.9
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 3.2e-58 229.2 284 50.0
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 1.2e-57 227.3 248 53.2
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 2.7e-57 226.1 211 61.1
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 6.1e-57 224.9 235 55.7
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.4e-55 219.2 229 52.8
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 1.8e-53 213.4 232 53.0
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 1.8e-53 213.4 233 54.1
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 2.0e-52 209.9 200 59.0
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 2.9e-51 206.1 218 56.4
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 9.5e-50 201.1 238 46.6
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 9.5e-50 201.1 223 51.1
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 5.4e-45 185.3 227 45.8
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 2.0e-44 183.3 228 46.5
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 7.8e-44 181.4 228 45.6
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 2.3e-43 179.9 228 46.5
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 2.3e-43 179.9 228 46.5
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 2.3e-43 179.9 228 46.5
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 3.9e-43 179.1 228 44.3
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 8.6e-43 177.9 229 46.3
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 8.6e-43 177.9 203 52.7
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 1.9e-42 176.8 230 45.7
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 2.5e-42 176.4 227 47.1
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 3.3e-42 176.0 230 46.5
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 7.3e-42 174.9 224 49.6
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.1e-40 169.5 195 48.7
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 4.0e-40 169.1 169 54.4
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 5.2e-40 168.7 260 38.5
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 8.9e-40 167.9 230 43.9
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.2e-39 167.5 273 41.8
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 1.2e-39 167.5 220 47.3
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 2.0e-39 166.8 118 71.2
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 7.0e-37 158.3 118 68.6
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 7.0e-37 158.3 118 68.6
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 9.2e-37 157.9 95 83.2
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 3.9e-35 152.5 107 72.0
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 2.5e-34 149.8 227 41.0
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 3.3e-34 149.4 118 66.1
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 4.7e-33 145.6 253 39.5
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 6.2e-33 145.2 162 51.9
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 8.0e-33 144.8 162 51.9
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 1.4e-32 144.1 123 62.6
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 7.1e-29 131.7 97 67.0
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 1.6e-28 130.6 171 46.8
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 2.1e-28 130.2 168 48.2
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 1.7e-27 127.1 252 33.7
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 5.1e-27 125.6 244 34.4
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 4.3e-26 122.5 109 61.5
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 5.6e-26 122.1 135 53.3
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 2.8e-25 119.8 115 57.4
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 1.5e-23 114.0 257 31.9
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 3.7e-22 109.4 143 48.3
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.2e-20 104.4 143 44.8
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.6e-20 104.0 158 41.8
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.1e-20 103.6 143 44.1
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 2.1e-20 103.6 62 83.9
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 2.1e-20 103.6 165 40.6
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 7.8e-20 101.7 127 48.0
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 3.0e-19 99.8 219 32.9
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 8.6e-19 98.2 173 38.2
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 1.5e-18 97.4 62 80.6
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 2.1e-17 93.6 66 66.7
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 2.4e-16 90.1 160 38.8
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 1.1e-13 81.3 53 73.6
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 1.9e-13 80.5 62 72.6
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 7.8e-12 75.1 98 49.0
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 8.1e-09 65.1 74 45.9
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.4e-08 64.3 62 54.8
QL06p015203 Quercus lobata HOM05D005370 ORTHO05D006659 3.1e-08 63.2 34 88.2


User provided reference genes

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