Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 5.0e-68 261.2 148 100.0
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 2.7e-50 202.2 131 79.4
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 4.0e-41 171.8 130 69.2
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 6.8e-41 171.0 131 74.8
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 7.3e-35 151.0 140 61.4
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 1.4e-33 146.7 140 63.6
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 8.9e-33 144.1 140 62.1
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 8.9e-33 144.1 140 62.1
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.4e-32 141.7 139 61.2
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.4e-31 137.9 163 52.8
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.7e-26 121.7 117 60.7
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.1e-25 120.6 132 51.5
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.8e-25 117.9 140 52.9
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 2.6e-24 115.9 133 48.1
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 5.8e-24 114.8 135 50.4
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 9.8e-24 114.0 128 48.4
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 2.2e-23 112.8 131 56.5
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.2e-23 112.8 136 50.0
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 2.2e-23 112.8 133 47.4
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 3.7e-23 112.1 134 49.3
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 3.7e-23 112.1 132 47.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 8.3e-23 110.9 133 46.6
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.4e-22 110.2 133 48.1
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 4.1e-22 108.6 128 46.9
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 7.0e-22 107.8 137 43.8
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 9.2e-22 107.5 131 49.6
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.6e-21 106.7 120 50.8
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.6e-21 106.7 133 45.1
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 2.1e-21 106.3 118 50.8
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 2.7e-21 105.9 138 45.7
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 7.8e-21 104.4 137 54.0
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 1.0e-20 104.0 136 47.1
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.0e-20 104.0 144 43.1
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.3e-20 103.6 134 45.5
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 1.3e-20 103.6 134 47.0
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 2.3e-20 102.8 136 45.6
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 2.3e-20 102.8 133 52.6
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 5.1e-20 101.7 134 44.8
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 5.1e-20 101.7 137 46.7
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 5.1e-20 101.7 130 49.2
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 8.6e-20 100.9 134 47.0
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.1e-19 100.5 133 49.6
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 3.3e-19 99.0 136 44.9
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 4.3e-19 98.6 131 49.6
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 5.6e-19 98.2 89 58.4
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.2e-18 97.1 134 41.8
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 1.2e-18 97.1 129 43.4
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 1.2e-18 97.1 137 50.4
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 1.6e-18 96.7 132 47.0
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.1e-18 96.3 134 44.8
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 2.8e-18 95.9 136 42.6
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 3.6e-18 95.5 131 45.8
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 3.6e-18 95.5 138 45.7
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 3.6e-18 95.5 135 42.2
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 4.7e-18 95.1 134 44.0
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.7e-18 95.1 133 46.6
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.7e-18 95.1 133 46.6
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.7e-18 95.1 132 46.2
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 6.2e-18 94.7 86 59.3
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 6.2e-18 94.7 124 43.5
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 8.1e-18 94.4 134 44.8
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 8.1e-18 94.4 125 46.4
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 8.1e-18 94.4 114 49.1
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 1.1e-17 94.0 132 43.9
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.1e-17 94.0 131 45.0
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.4e-17 93.6 124 46.0
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.4e-17 93.6 134 38.8
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.8e-17 93.2 86 57.0
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 1.8e-17 93.2 86 57.0
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 2.3e-17 92.8 128 41.4
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 2.3e-17 92.8 144 46.5
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 3.1e-17 92.4 138 38.4
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 5.2e-17 91.7 125 44.0
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 1.2e-16 90.5 141 48.2
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.2e-16 90.5 84 57.1
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.5e-16 90.1 143 41.3
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 2.6e-16 89.4 115 52.2
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 4.4e-16 88.6 86 55.8
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 4.4e-16 88.6 135 47.4
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 5.8e-16 88.2 89 53.9
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 5.8e-16 88.2 89 53.9
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 9.9e-16 87.4 135 41.5
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.3e-15 87.0 117 44.4
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 6.4e-15 84.7 135 42.2
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 1.4e-14 83.6 129 41.9
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.9e-14 83.2 87 50.6
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 1.9e-14 83.2 111 47.7
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.2e-14 82.4 147 34.7
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 3.2e-14 82.4 134 39.6
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 4.1e-14 82.0 86 52.3
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 4.1e-14 82.0 88 47.7
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 5.4e-14 81.6 136 45.6
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 5.4e-14 81.6 97 48.5
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 9.2e-14 80.9 87 55.2
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 9.2e-14 80.9 87 54.0
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 9.2e-14 80.9 87 55.2
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 9.2e-14 80.9 87 54.0
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 9.2e-14 80.9 116 48.3
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.2e-13 80.5 112 42.9
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 1.2e-13 80.5 137 34.3
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 1.6e-13 80.1 133 36.1
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 2.1e-13 79.7 86 48.8
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 2.1e-13 79.7 142 40.8
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 4.6e-13 78.6 138 45.7
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 6.0e-13 78.2 107 58.9
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 6.0e-13 78.2 127 38.6
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.0e-12 77.4 129 38.0
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 2.3e-12 76.3 89 52.8
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 2.3e-12 76.3 67 58.2
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 1.1e-11 73.9 127 37.0
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 2.5e-11 72.8 67 56.7
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.3e-11 72.0 133 35.3
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 7.3e-11 71.2 95 44.2
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 9.5e-11 70.9 74 52.7
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 9.5e-11 70.9 80 47.5
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.2e-10 70.5 67 55.2
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 1.6e-10 70.1 66 54.5
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 1.6e-10 70.1 111 38.7
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 2.1e-10 69.7 122 39.3
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.8e-10 69.3 105 42.9
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 8.1e-10 67.8 84 41.7
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 1.4e-09 67.0 138 44.9
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 1.4e-09 67.0 85 44.7
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 4.0e-09 65.5 60 58.3
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 6.8e-09 64.7 67 50.7
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 1.5e-08 63.5 121 44.6
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 2.6e-08 62.8 96 43.8
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 4.4e-08 62.0 103 37.9
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 2.2e-07 59.7 68 45.6
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 6.4e-07 58.2 86 43.0
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 8.4e-07 57.8 85 47.1
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 8.4e-07 57.8 110 35.5
PSO063G2671 Papaver somniferum HOM05D000509 ORTHO05D006393 1.9e-06 56.6 130 33.1
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 4.2e-06 55.5 118 38.1
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 9.2e-06 54.3 88 42.0


User provided reference genes

Program Settings