Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 2.1e-88 328.9 157 100.0
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 4.2e-33 145.2 78 85.9
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 1.2e-32 143.7 77 89.6
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.7e-31 137.9 78 84.6
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 3.3e-30 135.6 78 83.3
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 3.7e-29 132.1 76 75.0
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 4.8e-29 131.7 77 75.3
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 6.3e-29 131.3 76 73.7
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 1.6e-27 126.7 78 74.4
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 2.7e-27 125.9 79 75.9
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 4.5e-27 125.2 67 89.6
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 1.3e-26 123.6 77 75.3
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 1.7e-26 123.2 75 78.7
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 2.9e-26 122.5 72 75.0
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 2.9e-26 122.5 72 77.8
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 6.5e-26 121.3 72 76.4
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 8.5e-26 120.9 74 75.7
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 1.1e-25 120.6 79 72.2
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 3.2e-25 119.0 73 72.6
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 3.2e-25 119.0 71 80.3
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 3.2e-25 119.0 80 68.8
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 1.6e-24 116.7 80 63.8
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 1.6e-24 116.7 74 70.3
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 2.1e-24 116.3 71 76.1
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 2.1e-24 116.3 80 61.2
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.7e-24 115.9 74 68.9
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 6.1e-24 114.8 71 71.8
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.1e-24 114.8 102 62.7
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 6.1e-24 114.8 82 62.2
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 6.1e-24 114.8 78 69.2
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 1.8e-23 113.2 80 62.5
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 2.3e-23 112.8 73 71.2
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 2.3e-23 112.8 71 76.1
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 3.0e-23 112.5 71 74.6
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 3.0e-23 112.5 71 74.6
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 4.0e-23 112.1 73 71.2
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 5.2e-23 111.7 70 74.3
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 5.2e-23 111.7 71 76.1
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 6.8e-23 111.3 76 69.7
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 1.5e-22 110.2 76 65.8
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 1.5e-22 110.2 71 77.5
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.0e-22 109.8 82 62.2
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 2.6e-22 109.4 72 70.8
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 3.4e-22 109.0 78 65.4
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 3.4e-22 109.0 81 65.4
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 4.4e-22 108.6 78 64.1
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 1.7e-21 106.7 73 61.6
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 2.2e-21 106.3 73 60.3
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 2.2e-21 106.3 72 72.2
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 3.7e-21 105.5 72 66.7
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 3.7e-21 105.5 70 70.0
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 4.8e-21 105.1 73 65.8
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 4.8e-21 105.1 71 73.2
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 6.3e-21 104.8 79 58.2
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 6.3e-21 104.8 80 57.5
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 1.8e-20 103.2 75 65.3
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 2.4e-20 102.8 74 63.5
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 3.1e-20 102.4 75 65.3
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 7.0e-20 101.3 75 64.0
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 9.1e-20 100.9 75 64.0
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 9.1e-20 100.9 64 73.4
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 1.2e-19 100.5 75 62.7
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 1.6e-19 100.1 75 64.0
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 2.7e-19 99.4 75 62.7
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 3.5e-19 99.0 77 59.7
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 7.7e-19 97.8 84 58.3
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.0e-18 97.4 66 69.7
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 1.3e-18 97.1 75 62.7
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 1.3e-18 97.1 73 63.0
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 2.9e-18 95.9 62 69.4
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 2.9e-18 95.9 57 75.4
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 8.6e-18 94.4 73 64.4
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 3.3e-17 92.4 71 63.4
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 9.5e-17 90.9 56 76.8
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 9.5e-17 90.9 56 76.8
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 2.8e-16 89.4 74 60.8
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 4.0e-15 85.5 80 52.5
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 4.5e-11 72.0 71 49.3
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 3.8e-10 68.9 50 62.0
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 2.8e-08 62.8 43 65.1
ECA248G3328 Erigeron canadensis HOM05D000152 ORTHO05D001046 4.7e-08 62.0 49 57.1
SGA_v2.0_scaffold114G31816 Striga asiatica HOM05D007721 ORTHO05D009811 8.0e-08 61.2 46 54.3
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 2.3e-07 59.7 48 60.4
Gohir.D07G127200 Gossypium hirsutum HOM05D007721 ORTHO05D009811 4.0e-07 58.9 54 44.4
arahy.Tifrunner.gnm1.ann1.K7RUU1 Arachis hypogaea HOM05D007721 ORTHO05D009811 2.6e-06 56.2 29 79.3
DCAR_024676 Daucus carota HOM05D007721 ORTHO05D009811 4.4e-06 55.5 59 44.1


User provided reference genes

Program Settings