Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 0.0e+00 2006.5 1049 100.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 3.5e-309 1065.1 1148 57.8
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.3e-266 923.7 1314 48.2
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.7e-266 923.3 1216 50.2
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.8e-265 919.8 1215 50.2
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-252 877.1 1271 47.4
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-228 797.3 1109 49.1
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 8.5e-162 575.5 1172 38.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 2.8e-157 560.5 1223 37.3
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 6.3e-149 532.7 1228 37.4
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.9e-121 441.4 1236 35.4
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.1e-120 438.0 1227 34.7
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.4e-119 435.3 1201 34.2
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.0e-115 421.4 1067 37.7
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.3e-114 417.9 1079 34.0
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.9e-114 417.5 1092 35.1
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.1e-113 415.6 1145 33.9
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 4.0e-111 407.1 1132 34.1
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 4.7e-104 383.6 411 57.7
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.7e-101 375.2 1195 32.2
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.6e-99 368.6 1139 32.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.0e-98 365.9 1112 32.8
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.1e-96 358.2 1186 32.6
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.4e-95 355.5 1154 30.5
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.1e-95 354.4 1083 31.1
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.0e-94 351.7 1144 32.3
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 7.5e-94 349.7 1137 32.4
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 9.9e-94 349.4 1111 32.9
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.2e-93 348.2 1146 30.9
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.3e-93 346.3 1048 33.4
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 1.2e-91 342.4 1161 30.9
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 1.6e-91 342.0 1169 31.8
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 6.0e-91 340.1 1083 33.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.3e-90 339.0 1155 30.6
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 8.6e-90 336.3 1142 31.8
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 5.6e-89 333.6 1176 31.6
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.8e-87 328.6 1182 30.5
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 3.4e-86 324.3 1110 30.7
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-84 318.9 1145 30.0
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.4e-84 318.9 1137 31.6
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 9.2e-84 316.2 1085 32.0
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 3.5e-83 314.3 1133 31.3
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 6.0e-83 313.5 1174 29.5
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.0e-83 313.5 1116 30.6
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.3e-82 312.4 1157 30.1
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 8.7e-82 309.7 1121 30.6
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 7.3e-81 306.6 1211 30.4
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.4e-79 301.6 1095 30.8
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.9e-77 293.9 1068 31.5
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.1e-76 292.7 1152 28.3
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 5.4e-76 290.4 1161 30.9
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 6.0e-75 287.0 1065 29.9
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 3.9e-74 284.3 525 40.6
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.9e-73 282.0 1104 30.9
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.1e-71 276.2 757 35.3
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-71 276.2 1089 30.2
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.1e-71 274.6 1062 29.1
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.4e-70 271.2 1105 28.7
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 2.7e-67 261.5 770 33.4
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 5.1e-66 257.3 1087 29.3
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.7e-66 256.5 1090 29.7
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.8e-64 250.8 1106 28.4
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 1.2e-59 236.1 1039 29.1
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.2e-59 236.1 1059 28.6
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 6.0e-59 233.8 523 37.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.3e-58 232.6 1043 29.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.1e-57 229.6 275 52.0
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 1.5e-57 229.2 936 28.7
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 7.4e-57 226.9 1005 29.1
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.6e-56 225.7 1057 28.8
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.6e-56 225.7 470 38.9
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.7e-56 224.6 1073 28.8
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 6.2e-56 223.8 276 51.8
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.8e-55 222.2 1127 26.4
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 7.6e-54 216.9 1123 27.2
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.2e-53 215.3 1149 27.9
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.9e-53 214.9 1149 27.9
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 6.5e-53 213.8 1130 26.5
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 2.5e-52 211.8 1075 28.7
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 5.5e-52 210.7 232 53.9
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.1e-49 203.0 1093 26.8
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 2.4e-47 195.3 227 51.5
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.7e-45 189.1 172 61.0
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.7e-45 189.1 1089 27.5
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 2.5e-44 185.3 1206 26.4
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 5.1e-42 177.6 1031 26.2
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 6.7e-42 177.2 914 28.1
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 4.3e-41 174.5 672 31.0
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 7.4e-41 173.7 270 43.0
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.8e-40 171.8 1043 27.8
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 6.5e-37 160.6 1070 24.4
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 4.2e-36 157.9 361 37.4
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.0e-34 153.3 868 26.6
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 8.8e-34 150.2 435 32.4
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 2.0e-33 149.1 347 34.9
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.8e-31 142.5 249 43.4
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 2.6e-30 138.7 231 43.3
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.7e-29 136.0 134 55.2
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.2e-28 131.7 231 42.0
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.2e-24 119.0 238 36.6
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 2.2e-24 119.0 239 40.2
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 2.2e-24 119.0 267 33.7
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 2.6e-22 112.1 148 45.9
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.6e-22 112.1 272 34.2
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 3.8e-21 108.2 1122 24.2
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 7.2e-20 104.0 1111 24.0
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 1.2e-19 103.2 93 52.7
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 2.1e-19 102.4 156 42.9
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.0e-18 98.6 112 52.7
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 8.8e-18 97.1 1061 22.1
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 1.5e-17 96.3 623 26.0
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.5e-17 96.3 73 60.3
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 2.0e-17 95.9 142 43.7
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 7.5e-17 94.0 126 46.8
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 4.8e-16 91.3 472 26.5
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 6.3e-16 90.9 113 47.8
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 6.3e-16 90.9 113 47.8
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 8.3e-16 90.5 1068 24.4
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 3.1e-15 88.6 137 43.8
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.0e-15 87.4 1063 22.5
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.0e-14 85.9 136 41.9
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 3.5e-14 85.1 1066 22.0
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 4.5e-14 84.7 486 25.5
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 4.5e-14 84.7 56 69.6
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 7.7e-14 84.0 1071 23.3
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.3e-13 83.2 372 28.8
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.7e-13 82.8 366 27.9
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.2e-13 82.4 308 27.9
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 3.8e-13 81.6 65 56.9
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 5.0e-13 81.3 183 35.0
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 6.1e-11 74.3 1075 21.7
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 8.0e-11 73.9 125 37.6
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 5.2e-10 71.2 122 37.7
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 5.2e-10 71.2 122 37.7
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.5e-09 69.7 606 25.7
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 5.7e-09 67.8 759 23.6
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 1.3e-08 66.6 465 26.2
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 2.8e-08 65.5 1078 21.4
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 4.8e-08 64.7 36 66.7
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 1.8e-07 62.8 68 38.2
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 4.1e-07 61.6 609 24.5
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 5.4e-07 61.2 115 35.7
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 9.1e-07 60.5 41 63.4
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.2e-06 60.1 31 64.5
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.2e-06 60.1 1050 22.6
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 2.7e-06 58.9 64 43.8
Os09g0502100 Oryza sativa ssp. japonica HOM05D020277 ORTHO05D023046 4.5e-06 58.2 129 34.1


User provided reference genes

Program Settings