Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G169400 Prunus persica HOM05D007138 ORTHO05D009148 0.0e+00 1749.2 882 100.0
MD04G1019900 Malus domestica HOM05D007138 ORTHO05D009148 8.1e-291 1003.8 904 62.4
RcHm_v2.0_Chr4g0412661 Rosa chinensis HOM05D007138 ORTHO05D009148 1.8e-210 736.9 907 53.3
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 1.5e-188 664.1 893 49.4
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 1.5e-188 664.1 893 49.5
FAN07G0102 Fragaria x ananassa HOM05D007138 ORTHO05D009148 5.5e-154 549.3 888 44.6
Haze_11677 Corylus avellana HOM05D007138 ORTHO05D009148 1.8e-109 401.4 847 37.9
QL06p027005 Quercus lobata HOM05D007138 ORTHO05D009148 1.8e-104 384.8 715 39.4
CiPaw.01G114100 Carya illinoinensis HOM05D007138 ORTHO05D009148 8.8e-104 382.5 968 35.3
Cfa008656 Carpinus fangiana HOM05D007138 ORTHO05D009148 1.6e-97 361.7 695 39.0
Thecc.04G192200 Theobroma cacao HOM05D007138 ORTHO05D009148 2.1e-89 334.7 939 34.8
Manes.01G054400 Manihot esculenta HOM05D007138 ORTHO05D009148 1.5e-82 312.0 947 32.4
GSVIVG01031579001 Vitis vinifera HOM05D007138 ORTHO05D009148 3.4e-79 300.8 416 45.4
Dinv27178 Davidia involucrata HOM05D007138 ORTHO05D009148 2.4e-77 294.7 552 39.9
Duzib151G0530 Durio zibethinus HOM05D007138 ORTHO05D009148 1.0e-75 289.3 928 33.4
Potri.002G236300 Populus trichocarpa HOM05D007138 ORTHO05D009148 6.2e-73 280.0 843 32.7
Gohir.D09G201200 Gossypium hirsutum HOM05D007138 ORTHO05D009148 3.4e-71 274.2 943 31.2
Gorai.006G224900 Gossypium raimondii HOM05D007138 ORTHO05D009148 5.8e-71 273.5 943 31.1
TAR365G0398 Trochodendron aralioides HOM05D007138 ORTHO05D009148 5.4e-69 266.9 463 42.8
Gohir.A09G207700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 9.2e-69 266.2 948 31.1
Atru.chr3.1784 Acer truncatum HOM05D007138 ORTHO05D009148 7.8e-68 263.1 374 44.1
CANSAT78G1621 Cannabis sativa HOM05D007138 ORTHO05D009148 1.7e-67 261.9 942 30.9
Sabra02G0180000 Salix brachista HOM05D007138 ORTHO05D009148 2.1e-65 255.0 850 31.1
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 3.8e-62 244.2 417 38.8
Hma1.2p1_1457F.1_g284650 Hydrangea macrophylla HOM05D007138 ORTHO05D009148 8.4e-62 243.0 364 44.2
Glyma.08G107400 Glycine max HOM05D007138 ORTHO05D009148 2.4e-61 241.5 798 32.0
Glyma.05G150500 Glycine max HOM05D007138 ORTHO05D009148 5.4e-61 240.4 839 30.5
Gohir.A02G017700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.7e-59 235.3 880 30.6
Gorai.005G025100 Gossypium raimondii HOM05D007138 ORTHO05D009148 1.5e-58 232.3 881 30.4
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 3.3e-58 231.1 699 31.9
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 3.3e-58 231.1 690 31.4
Nn1g08135 Nelumbo nucifera HOM05D007138 ORTHO05D009148 3.3e-58 231.1 501 36.5
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 3.1e-56 224.6 925 29.8
Gohir.D02G019900 Gossypium hirsutum HOM05D007138 ORTHO05D009148 2.6e-55 221.5 880 29.8
Eucgr.H02635 Eucalyptus grandis HOM05D007138 ORTHO05D009148 2.2e-54 218.4 790 27.6
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 2.4e-53 214.9 722 33.1
Medtr8g083310 Medicago truncatula HOM05D007138 ORTHO05D009148 4.2e-53 214.2 686 31.6
Ca_18004_v3 Cicer arietinum L. HOM05D007138 ORTHO05D009148 5.4e-53 213.8 686 31.0
Cpa.g.sc157.22 Carica papaya HOM05D007138 ORTHO05D009148 4.6e-52 210.7 471 36.1
Cc03_g09210 Coffea canephora HOM05D007138 ORTHO05D009148 1.0e-51 209.5 911 27.6
Hund25334 Selenicereus undatus HOM05D007138 ORTHO05D009148 2.3e-51 208.4 602 30.7
AUR62020894 Chenopodium quinoa HOM05D007138 ORTHO05D009148 1.5e-50 205.7 473 32.6
Sc13g0000510 Simmondsia chinensis HOM05D007138 ORTHO05D009148 1.5e-50 205.7 484 34.5
CsaV3_6G009270 Cucumis sativus L. HOM05D007138 ORTHO05D009148 5.6e-50 203.8 818 29.5
Lj4g0024791 Lotus japonicus HOM05D007138 ORTHO05D009148 1.3e-49 202.6 793 29.1
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 2.1e-49 201.8 907 28.8
PGR083G1257 Punica granatum HOM05D007138 ORTHO05D009148 6.2e-49 200.3 812 28.9
Lalb_Chr12g0205841 Lupinus albus HOM05D007138 ORTHO05D009148 1.4e-48 199.1 388 37.4
EL10Ac3g07428 Beta vulgaris HOM05D007138 ORTHO05D009148 2.4e-48 198.4 460 33.7
Psat0s4823g0040 Pisum sativum HOM05D007138 ORTHO05D009148 9.0e-48 196.4 378 37.8
SalBow2G2858 Salvia bowleyana HOM05D007138 ORTHO05D009148 7.6e-47 193.4 884 28.7
AUR62018524 Chenopodium quinoa HOM05D007138 ORTHO05D009148 2.2e-46 191.8 556 30.2
ClCG06G003170 Citrullus lanatus HOM05D007138 ORTHO05D009148 2.9e-46 191.4 849 28.0
Phvul.003G291400 Phaseolus vulgaris HOM05D007138 ORTHO05D009148 1.4e-45 189.1 736 30.4
THA.LOC104804782 Tarenaya hassleriana HOM05D007138 ORTHO05D009148 7.9e-44 183.3 402 37.1
Sed0014888 Sechium edule HOM05D007138 ORTHO05D009148 1.3e-43 182.6 670 30.0
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 1.3e-43 182.6 564 30.9
Migut.G00946 Erythranthe guttata HOM05D007138 ORTHO05D009148 1.8e-43 182.2 499 31.1
Oeu034315.1 Olea europaea HOM05D007138 ORTHO05D009148 2.3e-43 181.8 467 32.3
SalBow2G0985 Salvia bowleyana HOM05D007138 ORTHO05D009148 2.3e-43 181.8 606 30.4
ECA233G0560 Erigeron canadensis HOM05D007138 ORTHO05D009148 8.7e-43 179.9 903 26.2
Lsat_1_v5_gn_6_59601 Lactuca sativa HOM05D007138 ORTHO05D009148 2.5e-42 178.3 426 32.4
Solyc09g092510.3 Solanum lycopersicum HOM05D007138 ORTHO05D009148 1.4e-40 172.6 1027 26.0
Peaxi162Scf00286g01047 Petunia axillaris HOM05D007138 ORTHO05D009148 3.1e-40 171.4 617 29.3
VMungo0251G1281 Vigna mungo HOM05D007138 ORTHO05D009148 9.0e-40 169.9 284 43.0
Nitab4.5_0000037g0170 Nicotiana tabacum HOM05D007138 ORTHO05D009148 1.2e-39 169.5 693 29.0
HanXRQChr02g0058451 Helianthus annuus HOM05D007138 ORTHO05D009148 2.0e-39 168.7 466 32.4
Aqoxy2G03906 Aquilegia oxysepala HOM05D007138 ORTHO05D009148 2.6e-39 168.3 792 26.5
MELO3C021153.2 Cucumis melo HOM05D007138 ORTHO05D009148 1.3e-38 166.0 242 45.0
BcaC06g35563 Brassica carinata HOM05D007138 ORTHO05D009148 2.2e-38 165.2 385 34.0
Ah.04g149560 Amaranthus hybridus HOM05D001269 ORTHO05D001083 4.9e-38 164.1 466 30.3
BcaB06g26533 Brassica carinata HOM05D007138 ORTHO05D009148 1.4e-37 162.5 370 34.6
A07p08650 Brassica napus HOM05D007138 ORTHO05D009148 2.5e-37 161.8 456 32.5
BraA07t28655Z Brassica rapa HOM05D007138 ORTHO05D009148 2.5e-37 161.8 456 32.5
Sp3g21450 Schrenkiella parvula HOM05D007138 ORTHO05D009148 7.1e-37 160.2 375 34.4
PGSC0003DMG400021869 Solanum tuberosum HOM05D007138 ORTHO05D009148 7.1e-37 160.2 161 52.2
Carub.0003s2404 Capsella rubella HOM05D007138 ORTHO05D009148 1.2e-36 159.5 369 34.4
Sopen09g035410 Solanum pennellii HOM05D007138 ORTHO05D009148 1.2e-36 159.5 205 44.4
C07p13480 Brassica napus HOM05D007138 ORTHO05D009148 1.6e-36 159.1 385 33.8
BolC7t41843H Brassica oleracea HOM05D007138 ORTHO05D009148 1.6e-36 159.1 385 33.8
unitig_747.g21666 Utricularia gibba HOM05D007138 ORTHO05D009148 6.0e-36 157.1 348 35.3
CARHR099730 Cardamine hirsuta HOM05D007138 ORTHO05D009148 1.0e-35 156.4 476 30.0
AT3G23740 Arabidopsis thaliana HOM05D007138 ORTHO05D009148 9.6e-34 149.8 360 33.9
Thhalv10002448m.g Eutrema salsugineum HOM05D007138 ORTHO05D009148 2.8e-33 148.3 541 28.3
AL3G38640 Arabidopsis lyrata HOM05D007138 ORTHO05D009148 1.1e-32 146.4 498 29.1
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 5.3e-32 144.1 200 45.5
Lsat_1_v5_gn_6_58941 Lactuca sativa HOM05D007138 ORTHO05D009148 3.0e-27 128.3 965 26.4
Oeu056444.1 Olea europaea HOM05D007138 ORTHO05D009148 5.1e-27 127.5 521 27.1
Os01g0101800 Oryza sativa ssp. japonica HOM05D007138 ORTHO05D009148 1.1e-24 119.8 125 50.4
Zm00001eb334100 Zea mays HOM05D007138 ORTHO05D009148 1.4e-24 119.4 125 48.8
Nn1g02395 Nelumbo nucifera HOM05D007138 ORTHO05D009148 9.0e-24 116.7 298 35.9
Aa31LG8G10280 Aethionema arabicum HOM05D007138 ORTHO05D009148 4.5e-23 114.4 345 30.1
Zm00001eb127090 Zea mays HOM05D007138 ORTHO05D009148 5.1e-19 100.9 109 47.7
CDE09G0581 Ceratophyllum demersum HOM05D007138 ORTHO05D009148 7.4e-18 97.1 381 27.8
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 1.3e-17 96.3 127 40.2
ATR0561G013 Amborella trichopoda HOM05D007138 ORTHO05D009148 6.7e-11 73.9 463 22.9
Ciclev10006158m.g Citrus clementina HOM05D007138 ORTHO05D009148 2.2e-09 68.9 151 33.8
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 4.1e-08 64.7 119 33.6
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 2.2e-06 58.9 146 32.2
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 5.0e-06 57.8 107 35.5
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 5.0e-06 57.8 92 40.2
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 5.0e-06 57.8 90 38.9
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 5.0e-06 57.8 55 47.3
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 8.5e-06 57.0 168 28.0


User provided reference genes

Program Settings