Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G162000 Prunus persica HOM05D000237 ORTHO05D026387 5.1e-38 160.6 82 100.0
Prupe.3G125400 Prunus persica HOM05D000237 ORTHO05D026387 3.4e-26 121.3 64 100.0
DCAR_003590 Daucus carota HOM05D000237 ORTHO05D001145 3.2e-08 61.6 35 91.4
Prupe.1G489100 Prunus persica HOM05D000237 ORTHO05D001145 3.2e-08 61.6 35 91.4
Actinidia15210 Actinidia chinensis HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
CAN.G405.12 Capsicum annuum HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
CiPaw.15G031000 Carya illinoinensis HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Dinv14697 Davidia involucrata HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Duzib041G0258 Durio zibethinus HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
FvH4_2g27940 Fragaria vesca HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
FAN15G0936 Fragaria x ananassa HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
FAN15G3712 Fragaria x ananassa HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
FAN20G0226 Fragaria x ananassa HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
FAN24G2197 Fragaria x ananassa HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Gohir.A02G110800 Gossypium hirsutum HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Gorai.013G108200 Gossypium raimondii HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Lj4A681T42 Lonicera japonica HOM05D000237 ORTHO05D001145 9.3e-08 60.1 39 79.5
RcHm_v2.0_Chr6g0296761 Rosa chinensis HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Solyc04g057930.4 Solanum lycopersicum HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Sopen04g025790 Solanum pennellii HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
PGSC0003DMG400025316 Solanum tuberosum HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
Thecc.08G133500 Theobroma cacao HOM05D000237 ORTHO05D001145 9.3e-08 60.1 35 88.6
CSS0035162 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 1.2e-07 59.7 35 85.7
ClCG08G006040 Citrullus lanatus HOM05D000237 ORTHO05D001145 1.2e-07 59.7 35 88.6
Cc10_g13710 Coffea canephora HOM05D000237 ORTHO05D001145 1.2e-07 59.7 39 79.5
MELO3C008469.2 Cucumis melo HOM05D000237 ORTHO05D001145 1.2e-07 59.7 35 88.6
Eucgr.E01004 Eucalyptus grandis HOM05D000237 ORTHO05D001145 1.2e-07 59.7 39 79.5
Oeu047176.2 Olea europaea HOM05D000237 ORTHO05D001145 1.2e-07 59.7 35 85.7
Sed0022076 Sechium edule HOM05D000237 ORTHO05D001145 1.2e-07 59.7 35 88.6
Hma1.2p1_1121F.1_g259240 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 1.6e-07 59.3 39 79.5
Potri.002G077900 Populus trichocarpa HOM05D000237 ORTHO05D001145 1.6e-07 59.3 39 79.5
Haze_17640 Corylus avellana HOM05D000237 ORTHO05D001145 2.1e-07 58.9 37 83.8
Duzib093G0562 Durio zibethinus HOM05D000237 ORTHO05D001145 2.1e-07 58.9 35 85.7
Duzib116G0620 Durio zibethinus HOM05D000237 ORTHO05D001145 2.1e-07 58.9 35 88.6
FAN27G2116 Fragaria x ananassa HOM05D000237 ORTHO05D001145 2.1e-07 58.9 35 85.7
MD08G1160400 Malus domestica HOM05D000237 ORTHO05D016966 2.1e-07 58.9 35 85.7
MD15G1133500 Malus domestica HOM05D000237 ORTHO05D001145 2.1e-07 58.9 35 85.7
Nn1g08949 Nelumbo nucifera HOM05D000237 ORTHO05D001145 2.1e-07 58.9 35 85.7
QL03p058443 Quercus lobata HOM05D000237 ORTHO05D026387 2.1e-07 58.9 41 75.6
Actinidia03426 Actinidia chinensis HOM05D000237 ORTHO05D001145 2.7e-07 58.5 39 79.5
Actinidia21274 Actinidia chinensis HOM05D000237 ORTHO05D001145 2.7e-07 58.5 35 85.7
Actinidia33326 Actinidia chinensis HOM05D000237 ORTHO05D026387 2.7e-07 58.5 39 79.5
Actinidia33634 Actinidia chinensis HOM05D000237 ORTHO05D001145 2.7e-07 58.5 39 79.5
Ciclev10000358m.g Citrus clementina HOM05D000237 ORTHO05D001145 2.7e-07 58.5 39 79.5
CsaV3_6G034030 Cucumis sativus L. HOM05D000237 ORTHO05D001145 2.7e-07 58.5 35 85.7
Dinv27267 Davidia involucrata HOM05D000237 ORTHO05D001145 2.7e-07 58.5 39 79.5
Manes.02G168800 Manihot esculenta HOM05D000237 ORTHO05D001145 2.7e-07 58.5 35 85.7
Hund17349 Selenicereus undatus HOM05D000237 ORTHO05D001145 2.7e-07 58.5 39 79.5
CSS0014669 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 3.5e-07 58.2 35 82.9
CSS0019791 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 3.5e-07 58.2 35 82.9
Gohir.D03G063200 Gossypium hirsutum HOM05D000237 ORTHO05D001145 3.5e-07 58.2 35 85.7
Lj7A351T51 Lonicera japonica HOM05D000237 ORTHO05D001145 3.5e-07 58.2 39 79.5
Nitab4.5_0000317g0200 Nicotiana tabacum HOM05D000237 ORTHO05D001145 3.5e-07 58.2 35 85.7
Nitab4.5_0009478g0010 Nicotiana tabacum HOM05D000237 ORTHO05D001145 3.5e-07 58.2 35 85.7
TAR628G1575 Trochodendron aralioides HOM05D000237 ORTHO05D001145 3.5e-07 58.2 35 85.7
CANSAT25G2606 Cannabis sativa HOM05D000237 ORTHO05D001145 4.6e-07 57.8 35 82.9
Rhsim11G0071900 Rhododendron simsii HOM05D000237 ORTHO05D001145 4.6e-07 57.8 35 85.7
SalBow7G0658 Salvia bowleyana HOM05D000237 ORTHO05D001145 4.6e-07 57.8 35 82.9
SalBow7G0660 Salvia bowleyana HOM05D000237 ORTHO05D001145 4.6e-07 57.8 35 82.9
TWI34G0093 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 4.6e-07 57.8 35 82.9
TAR376G0837 Trochodendron aralioides HOM05D000237 ORTHO05D001145 4.6e-07 57.8 35 82.9
EL10Ac1g01361 Beta vulgaris HOM05D000237 ORTHO05D001145 6.1e-07 57.4 39 76.9
AUR62007707 Chenopodium quinoa HOM05D000237 ORTHO05D001145 6.1e-07 57.4 39 76.9
AUR62013434 Chenopodium quinoa HOM05D000237 ORTHO05D001145 6.1e-07 57.4 39 76.9
Ca_16612_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 6.1e-07 57.4 39 79.5
Nn5g28443 Nelumbo nucifera HOM05D000237 ORTHO05D001145 6.1e-07 57.4 35 82.9
Peaxi162Scf00066g00314 Petunia axillaris HOM05D000237 ORTHO05D001145 6.1e-07 57.4 39 76.9
Potri.005G182800 Populus trichocarpa HOM05D000237 ORTHO05D001145 6.1e-07 57.4 35 82.9
vmacro00867 Vaccinium macrocarpon HOM05D000237 ORTHO05D001145 6.1e-07 57.4 35 82.9
Manes.18G082900 Manihot esculenta HOM05D000237 ORTHO05D001145 7.9e-07 57.0 35 82.9
TAR381G0839 Trochodendron aralioides HOM05D000237 ORTHO05D001145 7.9e-07 57.0 39 74.4
MSTRG.1409 Avicennia marina HOM05D000237 ORTHO05D001145 1.0e-06 56.6 35 80.0
MSTRG.25356 Avicennia marina HOM05D000237 ORTHO05D001145 1.0e-06 56.6 39 71.8
Migut.C01069 Erythranthe guttata HOM05D000237 ORTHO05D001145 1.0e-06 56.6 35 80.0
Hma1.2p1_0880F.1_g231820 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 1.0e-06 56.6 39 76.9
Lsat_1_v5_gn_1_7980 Lactuca sativa HOM05D000237 ORTHO05D001145 1.0e-06 56.6 35 80.0
Phvul.001G067700 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 1.0e-06 56.6 35 82.9
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 1.0e-06 56.6 39 74.4
VMungo0647G0265 Vigna mungo HOM05D000237 ORTHO05D001145 1.0e-06 56.6 35 82.9
arahy.Tifrunner.gnm1.ann1.657AS3 Arachis hypogaea HOM05D000237 ORTHO05D001145 1.3e-06 56.2 35 82.9
arahy.Tifrunner.gnm1.ann1.Q6N5X0 Arachis hypogaea HOM05D000237 ORTHO05D001145 1.3e-06 56.2 35 82.9
ECA246G1840 Erigeron canadensis HOM05D000237 ORTHO05D001145 1.3e-06 56.2 39 74.4
QL09p032269 Quercus lobata HOM05D000237 ORTHO05D001145 1.3e-06 56.2 35 82.9
QL09p032284 Quercus lobata HOM05D000237 ORTHO05D001145 1.3e-06 56.2 35 82.9
SGA_v2.0_scaffold52G18916 Striga asiatica HOM05D000237 ORTHO05D001145 1.3e-06 56.2 35 80.0
HanXRQChr02g0045131 Helianthus annuus HOM05D000237 ORTHO05D001145 1.8e-06 55.8 34 82.4
Lalb_Chr17g0343581 Lupinus albus HOM05D000237 ORTHO05D001145 1.8e-06 55.8 39 74.4
Phvul.009G130300 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 1.8e-06 55.8 37 78.4
Sed0010565 Sechium edule HOM05D000237 ORTHO05D001145 2.3e-06 55.5 39 71.8
Sc04g0006030 Simmondsia chinensis HOM05D000237 ORTHO05D001145 2.3e-06 55.5 35 80.0
MBI06_g35215_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D001145 3.0e-06 55.1 35 74.3
Medtr3g088640 Medicago truncatula HOM05D000237 ORTHO05D001145 3.0e-06 55.1 39 76.9
Glyma.13G034500 Glycine max HOM05D000237 ORTHO05D001145 3.9e-06 54.7 35 77.1
Glyma.14G155500 Glycine max HOM05D000237 ORTHO05D001145 3.9e-06 54.7 35 77.1
Lj1g0008419 Lotus japonicus HOM05D000237 ORTHO05D001145 3.9e-06 54.7 35 80.0
PGR044G1651 Punica granatum HOM05D000237 ORTHO05D001145 3.9e-06 54.7 39 71.8
HanXRQChr05g0149771 Helianthus annuus HOM05D000237 ORTHO05D001145 5.1e-06 54.3 35 80.0
Lsat_1_v5_gn_6_110320 Lactuca sativa HOM05D000237 ORTHO05D001145 5.1e-06 54.3 39 69.2
Sabra05G0138600 Salix brachista HOM05D000237 ORTHO05D001145 5.1e-06 54.3 34 79.4
VMungo1309G0232 Vigna mungo HOM05D000237 ORTHO05D001145 5.1e-06 54.3 36 77.8
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 6.7e-06 53.9 35 80.0
SGA_v2.0_scaffold24G10417 Striga asiatica HOM05D000237 ORTHO05D001145 6.7e-06 53.9 35 74.3
THA.LOC104809993 Tarenaya hassleriana HOM05D000237 ORTHO05D001145 6.7e-06 53.9 39 71.8
TPR.G6331 Trifolium pratense HOM05D000237 ORTHO05D001145 6.7e-06 53.9 39 74.4
Lj1g0025999 Lotus japonicus HOM05D000237 ORTHO05D001145 8.7e-06 53.5 35 77.1
Psat5g084440 Pisum sativum HOM05D000237 ORTHO05D001145 8.7e-06 53.5 35 80.0


User provided reference genes

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