Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 0.0e+00 1176.0 634 100.0
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 1.7e-178 630.2 637 62.3
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 4.5e-158 562.4 619 56.2
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 2.6e-150 536.6 622 53.2
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 4.5e-150 535.8 645 53.2
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 2.3e-138 496.9 627 51.7
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 1.2e-134 484.6 617 50.6
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.7e-133 480.7 589 50.6
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.8e-133 479.6 615 49.8
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.5e-133 478.8 615 49.6
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.5e-132 476.9 629 50.7
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.2e-132 476.5 614 51.5
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.8e-125 453.0 459 58.4
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 6.1e-115 419.1 495 49.7
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 4.4e-113 412.9 665 42.9
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.1e-111 406.8 641 44.5
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 2.9e-109 400.2 493 48.1
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.0e-106 391.7 562 44.7
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 3.4e-105 386.7 492 49.6
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 7.5e-105 385.6 561 44.7
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 1.7e-104 384.4 500 47.4
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 6.3e-104 382.5 646 42.1
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 1.8e-103 380.9 631 43.6
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 9.2e-103 378.6 495 49.9
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 2.0e-102 377.5 645 45.0
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.7e-102 377.1 491 46.4
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 6.6e-101 372.5 508 47.0
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.5e-100 371.3 634 43.8
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 3.3e-100 370.2 616 40.6
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 4.3e-100 369.8 699 40.1
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 1.2e-99 368.2 620 45.5
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 1.0e-98 365.2 612 41.3
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 1.0e-98 365.2 640 46.6
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 1.4e-98 364.8 491 48.5
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 1.8e-98 364.4 623 40.6
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 6.8e-98 362.5 615 40.3
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.2e-97 361.7 653 39.7
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 4.4e-97 359.8 658 39.5
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.3e-96 358.2 624 41.2
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 3.7e-96 356.7 632 40.2
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 5.4e-95 352.8 619 41.4
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 1.2e-94 351.7 492 45.3
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 3.5e-94 350.1 627 41.8
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 3.5e-94 350.1 493 45.4
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 2.3e-93 347.4 631 40.6
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 5.0e-93 346.3 603 41.3
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 5.0e-93 346.3 640 40.2
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 1.9e-92 344.4 516 44.4
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 2.5e-92 344.0 566 41.5
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 8.9e-90 335.5 494 44.5
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 8.9e-90 335.5 616 37.2
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 7.5e-89 332.4 516 43.0
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 7.5e-89 332.4 644 41.1
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 9.8e-89 332.0 553 42.1
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 2.2e-88 330.9 497 44.9
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 4.9e-88 329.7 647 38.5
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 2.4e-87 327.4 613 39.2
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 2.7e-86 323.9 570 39.1
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.0e-85 322.0 634 37.7
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 1.7e-85 321.2 617 39.9
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 2.5e-84 317.4 510 42.5
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 9.5e-84 315.5 668 37.1
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 8.1e-83 312.4 534 40.6
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.2e-81 308.5 469 45.2
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 3.4e-81 307.0 655 36.9
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 2.9e-80 303.9 505 41.8
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 4.9e-80 303.1 501 38.9
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 1.1e-79 302.0 594 38.6
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 2.1e-78 297.7 650 39.1
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 3.5e-78 297.0 599 39.6
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 5.1e-77 293.1 418 47.8
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 6.6e-77 292.7 510 39.2
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 7.3e-76 289.3 576 41.5
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 4.7e-75 286.6 582 43.6
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 1.8e-74 284.6 495 37.8
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 2.4e-74 284.3 600 34.0
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 3.1e-74 283.9 628 33.6
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 5.2e-74 283.1 510 38.6
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 1.3e-72 278.5 568 37.5
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.9e-71 274.6 507 37.5
vmacro00455 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 3.5e-70 270.4 394 44.4
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 6.6e-69 266.2 567 37.9
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 8.7e-69 265.8 487 38.8
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 9.6e-68 262.3 559 37.7
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 1.8e-66 258.1 408 42.2
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 9.9e-65 252.3 570 36.3
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.3e-64 251.9 484 36.6
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 8.4e-64 249.2 494 35.8
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.1e-63 248.8 497 37.0
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 1.9e-63 248.1 494 36.4
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.4e-63 247.7 497 35.6
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 3.2e-63 247.3 646 33.0
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 7.1e-63 246.1 505 37.2
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 7.1e-63 246.1 502 34.7
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.2e-62 245.4 642 33.0
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 1.6e-62 245.0 494 35.4
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 2.1e-62 244.6 317 48.6
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 4.6e-62 243.4 492 36.4
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 4.6e-62 243.4 492 36.4
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.3e-61 241.9 487 33.9
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 6.6e-61 239.6 494 34.8
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.9e-60 238.0 557 38.4
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 1.9e-60 238.0 483 36.2
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 3.3e-60 237.3 476 35.7
Lj6C516G5 Lonicera japonica HOM05D002342 ORTHO05D002407 3.3e-60 237.3 430 40.0
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 4.3e-60 236.9 583 40.0
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 1.6e-59 235.0 319 45.8
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 1.1e-58 232.3 324 44.4
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.8e-58 231.5 454 35.2
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 5.8e-57 226.5 508 34.1
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.3e-56 225.3 489 33.3
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 2.9e-56 224.2 586 34.8
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 1.4e-55 221.9 487 36.8
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 2.4e-55 221.1 486 36.6
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 4.2e-55 220.3 327 44.0
ATR0829G161 Amborella trichopoda HOM05D002342 ORTHO05D002407 9.3e-55 219.2 622 31.2
HPP92_020882 Vanilla planifolia HOM05D002342 ORTHO05D002407 4.6e-54 216.9 592 33.6
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 6.7e-53 213.0 438 35.8
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 6.7e-53 213.0 447 35.3
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 1.5e-52 211.8 528 31.8
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.5e-52 211.1 495 31.9
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 7.4e-52 209.5 453 33.8
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 7.4e-52 209.5 475 34.3
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 6.2e-51 206.5 178 59.6
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 1.2e-49 202.2 446 34.5
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 1.5e-49 201.8 572 32.0
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 2.6e-49 201.1 390 39.5
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 3.4e-49 200.7 698 29.4
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 4.5e-49 200.3 441 34.7
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 1.7e-48 198.4 440 34.1
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 2.9e-48 197.6 449 33.9
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 1.4e-47 195.3 570 30.7
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 3.2e-47 194.1 447 34.0
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 3.2e-47 194.1 660 29.8
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 7.9e-46 189.5 558 31.2
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 3.9e-45 187.2 419 34.4
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 5.1e-45 186.8 248 46.8
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 1.2e-41 175.6 441 32.7
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 2.0e-41 174.9 321 41.4
Lj6A525G37 Lonicera japonica HOM05D002342 ORTHO05D002407 4.2e-39 167.2 247 44.1
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 3.5e-38 164.1 454 29.5
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.0e-37 162.5 191 47.6
Oeu054535.1 Olea europaea HOM05D002342 ORTHO05D002407 5.1e-37 160.2 244 43.0
Oeu054534.1 Olea europaea HOM05D002342 ORTHO05D002407 1.1e-36 159.1 244 42.6
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.5e-36 157.9 191 46.6
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 4.3e-36 157.1 238 44.1
SEGI_11248 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 4.3e-36 157.1 205 42.4
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 8.2e-35 152.9 351 37.9
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 4.1e-34 150.6 347 33.4
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 1.0e-32 146.0 341 32.8
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 5.5e-31 140.2 318 32.1
Prupe.1G358100 Prunus persica HOM05D002342 ORTHO05D002407 3.6e-30 137.5 151 56.3
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 4.5e-25 120.6 190 35.3
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 5.9e-25 120.2 462 27.3
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 4.2e-23 114.0 168 41.1
CiPaw.01G119100 Carya illinoinensis HOM05D002342 ORTHO05D002407 6.1e-22 110.2 102 55.9
FAN22G1019 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.8e-21 108.6 341 32.0
Hma1.2p1_0383F.1_g140550 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.0e-21 107.8 236 36.4
FvH4_4g13640 Fragaria vesca HOM05D002342 ORTHO05D002407 1.5e-20 105.5 312 32.7
Actinidia38750 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.3e-19 102.4 335 31.0
AagrBONN_evm.TU.Sc2ySwM_228.1730 Anthoceros agrestis HOM05D002342 ORTHO05D002407 8.5e-16 89.7 201 32.3
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 1.5e-12 79.0 145 40.0
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.6e-12 78.2 67 58.2
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 1.7e-11 75.5 72 52.8
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 2.7e-09 68.2 213 32.9
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 5.0e-08 63.9 154 37.0
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 5.5e-07 60.5 56 57.1


User provided reference genes

Program Settings