Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 5.1e-101 370.9 170 100.0
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 3.6e-86 321.6 175 85.7
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 3.3e-84 315.1 170 85.9
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 3.3e-84 315.1 170 85.9
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 9.7e-84 313.5 170 85.3
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 1.3e-83 313.2 170 85.3
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 3.7e-83 311.6 175 83.4
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 1.5e-79 299.7 170 82.4
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 2.0e-76 289.3 170 79.4
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 4.4e-76 288.1 169 79.9
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 7.5e-76 287.3 177 79.1
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 3.7e-75 285.0 172 77.9
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 5.3e-74 281.2 167 79.0
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 6.5e-72 274.2 171 76.0
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.9e-71 272.7 154 83.8
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 6.1e-70 267.7 171 74.9
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 6.1e-70 267.7 171 74.9
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 8.0e-70 267.3 170 76.5
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 8.0e-70 267.3 152 82.9
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 4.0e-69 265.0 148 83.1
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 2.8e-67 258.8 150 79.3
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 2.8e-67 258.8 151 78.8
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 8.3e-67 257.3 162 74.1
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 1.8e-66 256.1 151 78.8
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 4.1e-66 255.0 162 74.1
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 2.7e-65 252.3 151 79.5
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 1.3e-64 250.0 151 79.5
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 1.7e-64 249.6 151 76.2
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 2.2e-64 249.2 163 70.6
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 2.5e-63 245.7 170 68.8
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 4.2e-63 245.0 156 73.1
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 5.5e-63 244.6 152 74.3
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 2.1e-62 242.7 162 71.0
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 2.1e-62 242.7 160 72.5
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 4.7e-62 241.5 164 70.7
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.4e-61 240.0 152 75.7
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 1.4e-61 240.0 157 70.1
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 1.8e-61 239.6 154 75.3
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 6.8e-61 237.7 152 73.7
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 1.2e-60 236.9 151 71.5
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 1.5e-60 236.5 155 71.6
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 9.8e-60 233.8 160 70.0
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 2.2e-59 232.6 155 71.6
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 2.2e-59 232.6 155 71.6
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 3.7e-59 231.9 152 73.0
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 4.9e-59 231.5 169 67.5
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 2.4e-58 229.2 154 72.1
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 2.4e-58 229.2 142 78.2
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 2.4e-58 229.2 162 67.3
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 3.1e-58 228.8 170 67.1
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 5.4e-58 228.0 160 68.1
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 5.4e-58 228.0 147 72.8
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 1.2e-57 226.9 160 68.8
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 1.6e-57 226.5 152 70.4
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 1.6e-57 226.5 143 77.6
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 3.5e-57 225.3 151 70.2
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 4.5e-57 224.9 142 73.9
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 5.9e-57 224.6 160 67.5
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 2.9e-56 222.2 156 66.7
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 3.8e-56 221.9 158 68.4
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 3.8e-56 221.9 160 68.8
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 1.1e-55 220.3 140 73.6
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 1.9e-55 219.5 140 75.0
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 4.3e-55 218.4 160 65.0
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 7.3e-55 217.6 160 66.9
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 9.5e-55 217.2 140 74.3
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.2e-54 216.9 161 67.1
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 3.7e-51 205.3 141 69.5
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.8e-50 203.0 151 67.5
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 7.0e-50 201.1 143 69.9
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 7.0e-50 201.1 142 66.2
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 5.9e-49 198.0 137 72.3
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 1.1e-47 193.7 141 68.1
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 2.3e-45 186.0 161 57.8
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 3.5e-41 172.2 114 71.1
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 6.6e-40 167.9 167 52.1
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 1.5e-39 166.8 165 50.9
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 9.5e-39 164.1 167 49.7
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 9.5e-39 164.1 166 50.0
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 1.2e-38 163.7 167 50.3
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 1.6e-38 163.3 167 50.3
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 1.6e-38 163.3 168 50.0
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 2.1e-38 162.9 171 50.3
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 2.8e-38 162.5 167 49.7
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 2.8e-38 162.5 167 49.7
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 3.6e-38 162.2 167 49.7
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 3.6e-38 162.2 167 49.7
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 6.2e-38 161.4 167 50.3
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 2.3e-37 159.5 128 60.2
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.2e-33 147.1 129 54.3
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 1.0e-32 144.1 75 88.0
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 1.3e-32 143.7 168 45.8
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 3.4e-28 129.0 97 67.0
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 5.1e-24 115.2 65 81.5
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 2.0e-20 103.2 73 65.8
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 2.2e-19 99.8 70 68.6
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 5.4e-18 95.1 120 42.5
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 5.4e-18 95.1 120 43.3


User provided reference genes

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