Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.0e-179 633.3 314 100.0
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 5.0e-150 534.6 270 95.9
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 3.0e-147 525.4 270 94.4
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.2e-141 505.4 270 91.1
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 5.5e-141 504.6 270 91.9
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 5.5e-141 504.6 270 91.5
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.4e-141 503.8 270 91.9
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 2.7e-140 502.3 269 90.0
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.6e-140 501.9 270 91.1
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.5e-138 495.7 268 88.1
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.5e-138 495.7 270 87.8
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 3.3e-138 495.4 293 83.6
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.7e-137 493.0 270 87.8
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 3.7e-137 491.9 268 89.2
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.7e-137 491.9 295 82.0
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.1e-136 490.3 269 87.0
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.8e-136 489.6 270 87.4
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 2.4e-136 489.2 268 87.7
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 3.1e-136 488.8 270 87.0
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.1e-136 488.4 270 88.9
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.2e-135 486.9 268 87.3
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.0e-135 486.1 270 87.0
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 4.5e-135 485.0 268 86.9
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 4.5e-135 485.0 270 87.0
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 5.9e-135 484.6 310 78.7
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 7.7e-135 484.2 270 85.6
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.0e-134 483.8 270 87.0
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.8e-134 481.9 268 86.6
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.8e-134 481.9 270 86.7
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 5.0e-134 481.5 270 86.3
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.5e-134 481.1 268 85.8
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 8.5e-134 480.7 270 85.2
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 8.5e-134 480.7 270 85.2
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 8.5e-134 480.7 270 85.6
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.1e-133 480.3 268 86.2
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.4e-133 479.9 291 80.1
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.9e-133 479.6 268 85.4
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.9e-133 479.6 270 85.2
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 2.5e-133 479.2 271 88.2
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.5e-133 479.2 274 85.4
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 2.5e-133 479.2 270 84.8
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 3.2e-133 478.8 268 85.4
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 3.2e-133 478.8 268 86.2
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 4.2e-133 478.4 270 84.8
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 5.5e-133 478.0 268 85.1
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 5.5e-133 478.0 268 85.4
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.2e-132 476.9 270 84.4
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.2e-132 476.9 270 85.6
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.6e-132 476.5 268 84.7
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 7.9e-132 474.2 276 83.7
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.4e-131 473.4 265 87.9
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.4e-131 473.4 268 84.0
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.8e-131 473.0 270 85.9
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.3e-131 472.6 268 85.4
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 3.0e-131 472.2 270 84.4
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 5.1e-131 471.5 268 84.7
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 5.1e-131 471.5 268 85.1
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.1e-130 470.3 270 84.4
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.0e-130 469.5 270 83.0
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 2.6e-130 469.2 268 84.3
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 3.3e-130 468.8 268 84.0
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 7.4e-130 467.6 268 84.3
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 7.4e-130 467.6 268 84.3
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 7.4e-130 467.6 268 84.3
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 7.4e-130 467.6 268 84.7
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 9.7e-130 467.2 268 82.8
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 9.7e-130 467.2 268 84.3
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 9.7e-130 467.2 268 83.6
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.3e-129 466.8 268 84.0
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.3e-129 466.8 268 84.0
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.3e-129 466.8 268 84.3
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.7e-129 466.5 347 70.3
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.8e-129 465.7 268 84.0
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.8e-129 465.7 268 83.6
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 3.7e-129 465.3 268 84.3
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 3.7e-129 465.3 268 82.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 3.7e-129 465.3 275 81.5
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.3e-129 464.5 268 83.6
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 6.3e-129 464.5 268 84.0
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-128 463.0 268 83.2
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.8e-128 463.0 268 83.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.4e-128 462.6 276 81.2
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.4e-128 462.6 276 81.2
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.1e-128 461.8 268 82.8
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 5.3e-128 461.5 270 81.5
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 7.0e-128 461.1 270 80.4
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 9.1e-128 460.7 270 81.9
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 2.0e-127 459.5 268 81.7
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 4.5e-127 458.4 279 80.3
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.3e-126 456.8 268 80.2
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 2.9e-126 455.7 244 89.8
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.8e-126 455.3 307 73.3
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 8.5e-126 454.1 268 80.2
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 5.5e-125 451.4 274 78.8
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 7.2e-125 451.1 261 84.3
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.1e-124 449.5 270 82.6
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.1e-124 449.5 268 79.1
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 1.0e-123 447.2 244 87.7
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.4e-123 446.8 268 79.5
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 4.0e-123 445.3 268 81.0
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 5.2e-123 444.9 270 82.2
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 2.6e-119 432.6 268 79.1
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 7.7e-119 431.0 253 83.8
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 9.4e-117 424.1 268 78.0
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.0e-115 419.1 271 72.7
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.8e-112 409.8 257 79.8
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 4.1e-112 408.7 268 70.1
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 9.1e-112 407.5 268 72.0
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 8.0e-108 394.4 262 76.7
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 6.8e-107 391.3 224 85.7
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 5.7e-106 388.3 268 70.9
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.9e-102 375.9 245 78.0
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.9e-101 373.2 260 73.8
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.6e-100 369.0 203 88.7
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 8.0e-100 367.9 223 80.7
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.7e-95 352.8 204 83.8
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 7.8e-95 351.3 226 76.5
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 3.0e-94 349.4 223 78.5
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 9.5e-93 344.4 204 82.8
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.4e-89 331.6 269 62.8
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.2e-74 284.3 163 87.1
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.9e-72 276.9 163 84.7
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.6e-69 264.6 139 90.6
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 5.8e-66 255.4 153 77.8
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.3e-62 244.2 265 52.8
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.3e-60 237.7 147 78.2
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 2.7e-55 219.9 130 75.4
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 5.3e-51 205.7 106 84.0
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.2e-49 200.3 114 85.1
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.4e-48 197.6 106 81.1
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 9.6e-45 184.9 113 85.0
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 3.2e-40 169.9 276 42.4
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 6.0e-39 165.6 129 59.7
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-36 157.9 110 66.4
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 2.1e-31 140.6 115 59.1
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.1e-29 134.8 281 33.1
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.2e-23 114.8 88 62.5
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 3.6e-23 113.2 84 64.3
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.0e-22 111.7 289 32.2
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 1.1e-21 108.2 64 82.8
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 9.1e-19 98.6 92 59.8
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.2e-18 98.2 93 60.2
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.2e-18 98.2 64 70.3
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 7.7e-18 95.5 53 88.7
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 8.5e-17 92.0 50 84.0
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.9e-16 90.9 51 74.5
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 4.7e-15 86.3 51 76.5
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 7.4e-13 79.0 63 57.1
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.6e-10 71.2 37 81.1
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.6e-07 60.1 31 87.1


User provided reference genes

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