Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G149200 Prunus persica HOM05D001588 ORTHO05D002975 3.2e-46 188.0 89 100.0
Prupe.7G122000 Prunus persica HOM05D001588 ORTHO05D002975 4.8e-26 120.9 169 43.8
MD12G1101800 Malus domestica HOM05D001588 ORTHO05D002975 3.2e-22 108.2 169 40.2
FAN02G0909 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.6e-21 105.9 169 40.2
Sabra06G0093100 Salix brachista HOM05D001588 ORTHO05D002975 2.1e-21 105.5 169 40.2
RcHm_v2.0_Chr3g0471501 Rosa chinensis HOM05D001588 ORTHO05D002975 2.7e-21 105.1 169 39.6
TWI53G0599 Tripterygium wilfordii HOM05D001588 ORTHO05D002975 3.6e-21 104.8 169 39.1
TWI77G0360 Tripterygium wilfordii HOM05D001588 ORTHO05D002975 6.1e-21 104.0 168 38.7
Potri.006G118400 Populus trichocarpa HOM05D001588 ORTHO05D002975 1.4e-20 102.8 169 39.6
Atru.chr8.1676 Acer truncatum HOM05D001588 ORTHO05D002975 1.5e-19 99.4 169 37.3
Duzib106G0304 Durio zibethinus HOM05D001588 ORTHO05D002975 4.4e-19 97.8 169 36.7
Eucgr.A01588 Eucalyptus grandis HOM05D001588 ORTHO05D002975 9.8e-19 96.7 168 36.9
Manes.08G017400 Manihot esculenta HOM05D001588 ORTHO05D002975 1.7e-18 95.9 169 35.5
Thecc.05G076800 Theobroma cacao HOM05D001588 ORTHO05D002975 1.7e-18 95.9 169 36.1
Cfa016497 Carpinus fangiana HOM05D001588 ORTHO05D002975 2.2e-18 95.5 169 35.5
QL07p041178 Quercus lobata HOM05D001588 ORTHO05D002975 2.2e-18 95.5 168 35.7
AL3G21380 Arabidopsis lyrata HOM05D001588 ORTHO05D002975 3.1e-17 91.7 169 35.5
CARHR084550 Cardamine hirsuta HOM05D001588 ORTHO05D002975 5.4e-17 90.9 169 34.9
AT3G10050 Arabidopsis thaliana HOM05D001588 ORTHO05D002975 9.1e-17 90.1 169 35.5
Ciclev10011319m.g Citrus clementina HOM05D001588 ORTHO05D002975 9.1e-17 90.1 169 34.9
Manes.09G047609 Manihot esculenta HOM05D001588 ORTHO05D002975 9.1e-17 90.1 169 34.9
Actinidia31303 Actinidia chinensis HOM05D001588 ORTHO05D002975 1.2e-16 89.7 170 34.7
VMungo0720G1728 Vigna mungo HOM05D001588 ORTHO05D002975 2.0e-16 89.0 169 34.9
Glyma.10G064000 Glycine max HOM05D001588 ORTHO05D002975 2.7e-16 88.6 169 34.3
Phvul.007G225400 Phaseolus vulgaris HOM05D001588 ORTHO05D002975 2.7e-16 88.6 169 33.7
Sed0001057 Sechium edule HOM05D001588 ORTHO05D002975 2.7e-16 88.6 168 33.9
arahy.Tifrunner.gnm1.ann1.1YXT4F Arachis hypogaea HOM05D001588 ORTHO05D002975 4.5e-16 87.8 169 33.7
arahy.Tifrunner.gnm1.ann1.32P3WE Arachis hypogaea HOM05D001588 ORTHO05D002975 4.5e-16 87.8 169 33.7
Glyma.13G148600 Glycine max HOM05D001588 ORTHO05D002975 4.5e-16 87.8 169 34.3
Gohir.D04G106300 Gossypium hirsutum HOM05D001588 ORTHO05D002975 4.5e-16 87.8 169 34.3
ClCG04G009610 Citrullus lanatus HOM05D001588 ORTHO05D002975 5.9e-16 87.4 168 33.3
vmacro11209 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 5.9e-16 87.4 170 33.5
Carub.0003s0915 Capsella rubella HOM05D001588 ORTHO05D002975 7.7e-16 87.0 169 34.3
Cpa.g.sc5.116 Carica papaya HOM05D001588 ORTHO05D002975 7.7e-16 87.0 169 34.3
MELO3C024500.2 Cucumis melo HOM05D001588 ORTHO05D002975 7.7e-16 87.0 168 33.3
CsaV3_6G040240 Cucumis sativus L. HOM05D001588 ORTHO05D002975 7.7e-16 87.0 168 33.3
vmacro08808 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 7.7e-16 87.0 170 34.1
Sed0011255 Sechium edule HOM05D001588 ORTHO05D002975 1.0e-15 86.7 168 33.3
COL.COLO4_22266 Corchorus olitorius HOM05D001588 ORTHO05D002975 1.3e-15 86.3 169 34.3
Nitab4.5_0000132g0130 Nicotiana tabacum HOM05D001588 ORTHO05D002975 1.3e-15 86.3 127 37.8
Gohir.A09G143000 Gossypium hirsutum HOM05D001588 ORTHO05D002975 1.7e-15 85.9 168 33.9
Hma1.2p1_0564F.1_g179110 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 1.7e-15 85.9 170 34.1
Rhsim04G0137800 Rhododendron simsii HOM05D001588 ORTHO05D002975 1.7e-15 85.9 170 34.7
RhsimUnG0231900 Rhododendron simsii HOM05D001588 ORTHO05D002975 1.7e-15 85.9 170 34.7
Dinv35843 Davidia involucrata HOM05D001588 ORTHO05D002975 2.3e-15 85.5 167 34.1
Psat6g077520 Pisum sativum HOM05D001588 ORTHO05D002975 2.3e-15 85.5 167 35.3
CiPaw.09G006100 Carya illinoinensis HOM05D001588 ORTHO05D002975 2.9e-15 85.1 168 33.3
FvH4_6g17350 Fragaria vesca HOM05D001588 ORTHO05D002975 2.9e-15 85.1 89 52.8
FAN05G0064 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.9e-15 85.1 89 52.8
FAN05G2152 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.9e-15 85.1 89 52.8
FAN05G5823 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.9e-15 85.1 89 52.8
FAN09G2648 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.9e-15 85.1 89 52.8
FAN14G1509 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.9e-15 85.1 89 52.8
Gohir.D09G139200 Gossypium hirsutum HOM05D001588 ORTHO05D002975 2.9e-15 85.1 168 33.9
Gorai.006G159700 Gossypium raimondii HOM05D001588 ORTHO05D002975 2.9e-15 85.1 168 33.9
PGR142G1536 Punica granatum HOM05D001588 ORTHO05D002975 5.0e-15 84.3 168 34.5
RcHm_v2.0_Chr4g0394271 Rosa chinensis HOM05D001588 ORTHO05D002975 6.6e-15 84.0 88 51.1
Lalb_Chr09g0325431 Lupinus albus HOM05D001588 ORTHO05D002975 8.6e-15 83.6 168 32.7
CSS0010158 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 1.1e-14 83.2 170 33.5
CSS0025803 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 1.1e-14 83.2 170 33.5
MSTRG.26663 Avicennia marina HOM05D001588 ORTHO05D002975 1.9e-14 82.4 170 34.1
Medtr1g061800 Medicago truncatula HOM05D001588 ORTHO05D002975 3.3e-14 81.6 169 33.7
A03p35710 Brassica napus HOM05D001588 ORTHO05D002975 4.2e-14 81.3 169 32.5
TAR623G1568 Trochodendron aralioides HOM05D001588 ORTHO05D002975 4.2e-14 81.3 170 34.1
BcaB03g11575 Brassica carinata HOM05D001588 ORTHO05D002975 5.5e-14 80.9 169 32.0
Aa31LG3G2580 Aethionema arabicum HOM05D001588 ORTHO05D002975 7.2e-14 80.5 169 32.5
THA.LOC104823221 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 7.2e-14 80.5 169 33.1
Thhalv10020316m.g Eutrema salsugineum HOM05D001588 ORTHO05D002975 9.5e-14 80.1 170 32.4
Nitab4.5_0010518g0020 Nicotiana tabacum HOM05D001588 ORTHO05D002975 9.5e-14 80.1 110 41.8
BcaB04g21231 Brassica carinata HOM05D001588 ORTHO05D002975 2.1e-13 79.0 169 32.0
BcaC01g04258 Brassica carinata HOM05D001588 ORTHO05D002975 2.1e-13 79.0 169 32.5
C03p43380 Brassica napus HOM05D001588 ORTHO05D002975 2.1e-13 79.0 169 32.5
BolC3t16609H Brassica oleracea HOM05D001588 ORTHO05D002975 2.1e-13 79.0 169 32.5
Oeu031870.1 Olea europaea HOM05D001588 ORTHO05D002975 2.8e-13 78.6 174 33.9
TAR633G2163 Trochodendron aralioides HOM05D001588 ORTHO05D002975 2.8e-13 78.6 170 32.9
Hma1.2p1_1578F.1_g291790 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 3.6e-13 78.2 170 33.5
THA.LOC104816384 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 3.6e-13 78.2 169 32.5
Lj1g0002909 Lotus japonicus HOM05D001588 ORTHO05D002975 6.1e-13 77.4 169 32.0
Migut.J00482 Erythranthe guttata HOM05D001588 ORTHO05D002975 1.0e-12 76.6 170 32.9
Nitab4.5_0000132g0410 Nicotiana tabacum HOM05D001588 ORTHO05D002975 1.4e-12 76.3 170 31.8
BraA03t12745Z Brassica rapa HOM05D001588 ORTHO05D002975 1.8e-12 75.9 169 31.4
BraA05t22691Z Brassica rapa HOM05D001588 ORTHO05D002975 1.8e-12 75.9 169 32.0
Gohir.A04G067614 Gossypium hirsutum HOM05D001588 ORTHO05D002975 1.8e-12 75.9 89 47.2
Gorai.009G410200 Gossypium raimondii HOM05D001588 ORTHO05D002975 1.8e-12 75.9 89 47.2
Lj5g0023234 Lotus japonicus HOM05D001588 ORTHO05D002975 1.8e-12 75.9 169 30.8
Lj3A1008G68 Lonicera japonica HOM05D001588 ORTHO05D002975 2.3e-12 75.5 169 32.5
Sp3g08360 Schrenkiella parvula HOM05D001588 ORTHO05D002975 2.3e-12 75.5 169 31.4
C05p58030 Brassica napus HOM05D001588 ORTHO05D002975 3.0e-12 75.1 169 32.0
BolC5t34459H Brassica oleracea HOM05D001588 ORTHO05D002975 3.0e-12 75.1 169 32.0
Lsat_1_v5_gn_6_29060 Lactuca sativa HOM05D001588 ORTHO05D002975 4.0e-12 74.7 170 31.2
unitig_746.g26768 Utricularia gibba HOM05D001588 ORTHO05D002975 5.2e-12 74.3 170 33.5
A05p39000 Brassica napus HOM05D001588 ORTHO05D002975 6.8e-12 73.9 169 31.4
AUR62040179 Chenopodium quinoa HOM05D001588 ORTHO05D002975 8.9e-12 73.6 170 30.6
AUR62040181 Chenopodium quinoa HOM05D001588 ORTHO05D002975 8.9e-12 73.6 170 30.6
ECA233G3154 Erigeron canadensis HOM05D001588 ORTHO05D002975 8.9e-12 73.6 170 32.4
Sopen10g033220 Solanum pennellii HOM05D001588 ORTHO05D002975 8.9e-12 73.6 170 31.2
Haze_19500 Corylus avellana HOM05D001588 ORTHO05D001212 1.2e-11 73.2 157 31.2
Migut.L01735 Erythranthe guttata HOM05D001588 ORTHO05D002975 1.2e-11 73.2 168 32.7
Nitab4.5_0000963g0020 Nicotiana tabacum HOM05D001588 ORTHO05D002975 1.2e-11 73.2 89 46.1
CANSAT80G1765 Cannabis sativa HOM05D001588 ORTHO05D002975 1.5e-11 72.8 157 31.2
Sed0013024 Sechium edule HOM05D001588 ORTHO05D002975 1.5e-11 72.8 115 37.4
Sc20g0005880 Simmondsia chinensis HOM05D001588 ORTHO05D002975 1.5e-11 72.8 170 29.4
PGSC0003DMG400028273 Solanum tuberosum HOM05D001588 ORTHO05D002975 1.5e-11 72.8 170 30.6
Ca_11602_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 2.6e-11 72.0 169 30.8
HanXRQChr01g0028181 Helianthus annuus HOM05D001588 ORTHO05D002975 2.6e-11 72.0 87 40.2
PSO063G4077 Papaver somniferum HOM05D001588 ORTHO05D002975 2.6e-11 72.0 170 30.6
HanXRQChr11g0350771 Helianthus annuus HOM05D001588 ORTHO05D002975 3.4e-11 71.6 170 30.0
PSO339G2017 Papaver somniferum HOM05D001588 ORTHO05D002975 3.4e-11 71.6 170 31.2
ECA248G3418 Erigeron canadensis HOM05D001588 ORTHO05D002975 4.4e-11 71.2 89 41.6
Peaxi162Scf00163g00215 Petunia axillaris HOM05D001588 ORTHO05D002975 4.4e-11 71.2 170 32.4
Solyc10g083760.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 4.4e-11 71.2 170 30.6
PSO339G2383 Papaver somniferum HOM05D001588 ORTHO05D002975 5.7e-11 70.9 170 30.6
MSTRG.19212 Avicennia marina HOM05D001588 ORTHO05D002975 9.8e-11 70.1 168 32.1
A01p42070 Brassica napus HOM05D001588 ORTHO05D002975 9.8e-11 70.1 171 31.0
CAN.G541.22 Capsicum annuum HOM05D001588 ORTHO05D002975 9.8e-11 70.1 89 43.8
AUR62037925 Chenopodium quinoa HOM05D001588 ORTHO05D002975 9.8e-11 70.1 170 30.0
GSVIVG01033731001 Vitis vinifera HOM05D001588 ORTHO05D002975 9.8e-11 70.1 170 30.6
Ca_10489_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 1.3e-10 69.7 166 30.1
HanXRQChr13g0400241 Helianthus annuus HOM05D001588 ORTHO05D002975 1.3e-10 69.7 170 31.2
arahy.Tifrunner.gnm1.ann1.C5R797 Arachis hypogaea HOM05D001588 ORTHO05D002975 1.7e-10 69.3 87 44.8
CDE02G4744 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 1.7e-10 69.3 170 31.2
Peaxi162Scf00110g00912 Petunia axillaris HOM05D001588 ORTHO05D002975 2.2e-10 68.9 89 43.8
unitig_899.g15214 Utricularia gibba HOM05D001588 ORTHO05D002975 2.2e-10 68.9 170 31.8
HPP92_017794 Vanilla planifolia HOM05D001588 ORTHO05D002975 2.2e-10 68.9 166 30.1
Hund29355 Selenicereus undatus HOM05D001588 ORTHO05D002975 2.8e-10 68.6 170 31.2
Hund29356 Selenicereus undatus HOM05D001588 ORTHO05D002975 2.8e-10 68.6 170 31.2
Ah.08g211180 Amaranthus hybridus HOM05D001588 ORTHO05D002975 4.9e-10 67.8 170 30.0
TPR.G21546 Trifolium pratense HOM05D001588 ORTHO05D002975 4.9e-10 67.8 89 44.9
Lsat_1_v5_gn_1_51101 Lactuca sativa HOM05D001588 ORTHO05D002975 6.3e-10 67.4 89 39.3
PSO801G0202 Papaver somniferum HOM05D001588 ORTHO05D002975 6.3e-10 67.4 170 30.0
Peaxi162Scf00146g00320 Petunia axillaris HOM05D001588 ORTHO05D002975 6.3e-10 67.4 89 44.9
ClCG04G009590 Citrullus lanatus HOM05D001588 ORTHO05D002975 8.3e-10 67.0 123 33.3
CDE02G3443 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 1.1e-09 66.6 190 28.9
Ah.15g091270 Amaranthus hybridus HOM05D001588 ORTHO05D002975 1.8e-09 65.9 161 31.1
HanXRQChr02g0052141 Helianthus annuus HOM05D001588 ORTHO05D002975 1.8e-09 65.9 170 30.0
Aqoxy2G01530 Aquilegia oxysepala HOM05D001588 ORTHO05D002975 4.1e-09 64.7 171 31.6
BcaB03g15810 Brassica carinata HOM05D001588 ORTHO05D002975 5.4e-09 64.3 91 41.8
Lalb_Chr05g0215691 Lupinus albus HOM05D001588 ORTHO05D002975 5.4e-09 64.3 166 28.3
BcaC09g48118 Brassica carinata HOM05D001588 ORTHO05D002975 7.0e-09 63.9 38 71.1
Ca_11567_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 7.0e-09 63.9 160 30.0
CAN.G1138.23 Capsicum annuum HOM05D001588 ORTHO05D002975 9.2e-09 63.5 89 41.6
PGSC0003DMG400047128 Solanum tuberosum HOM05D001588 ORTHO05D002975 9.2e-09 63.5 89 41.6
Nitab4.5_0006709g0060 Nicotiana tabacum HOM05D001588 ORTHO05D002975 1.6e-08 62.8 101 36.6
RcHm_v2.0_Chr5g0055901 Rosa chinensis HOM05D001588 ORTHO05D002975 1.6e-08 62.8 89 39.3
Sed0008569 Sechium edule HOM05D001588 ORTHO05D002975 1.6e-08 62.8 60 46.7
Gorai.009G410300 Gossypium raimondii HOM05D001588 ORTHO05D002975 2.0e-08 62.4 38 71.1
Atru.chr3.3418 Acer truncatum HOM05D001588 ORTHO05D002975 2.7e-08 62.0 167 28.1
ATR0697G150 Amborella trichopoda HOM05D001588 ORTHO05D002975 3.5e-08 61.6 170 25.9
Nitab4.5_0001979g0010 Nicotiana tabacum HOM05D001588 ORTHO05D002975 4.5e-08 61.2 87 41.4
DCAR_017643 Daucus carota HOM05D001588 ORTHO05D002975 5.9e-08 60.8 87 40.2
Oeu040559.1 Olea europaea HOM05D001588 ORTHO05D002975 5.9e-08 60.8 84 41.7
SGA_v2.0_scaffold75G24813 Striga asiatica HOM05D001588 ORTHO05D002975 7.8e-08 60.5 89 40.4
MD11G1153900 Malus domestica HOM05D001588 ORTHO05D002975 1.7e-07 59.3 171 27.5
Os03g0713000 Oryza sativa ssp. japonica HOM05D001588 ORTHO05D002975 1.7e-07 59.3 87 39.1
TPR.G30344 Trifolium pratense HOM05D001588 ORTHO05D002975 1.7e-07 59.3 54 55.6
Dinv37367 Davidia involucrata HOM05D001588 ORTHO05D002975 2.3e-07 58.9 39 66.7
Sed0011316 Sechium edule HOM05D001588 ORTHO05D002975 2.3e-07 58.9 54 51.9
Sopen10g033010 Solanum pennellii HOM05D001588 ORTHO05D002975 3.9e-07 58.2 89 39.3
Zm00001eb055020 Zea mays HOM05D001588 ORTHO05D002975 3.9e-07 58.2 87 37.9
Zm00001eb216240 Zea mays HOM05D001588 ORTHO05D002975 3.9e-07 58.2 87 37.9
Cfa010105 Carpinus fangiana HOM05D001588 ORTHO05D002975 6.6e-07 57.4 111 33.3
Solyc10g083540.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 1.1e-06 56.6 89 39.3
EL10Ac7g16729 Beta vulgaris HOM05D001588 ORTHO05D002975 2.5e-06 55.5 38 60.5
DCAR_020796 Daucus carota HOM05D001588 ORTHO05D002975 3.3e-06 55.1 89 36.0
BolC1t05423H Brassica oleracea HOM05D001588 ORTHO05D002975 5.6e-06 54.3 32 68.8
BraA01t04276Z Brassica rapa HOM05D001588 ORTHO05D002975 5.6e-06 54.3 32 68.8
Mapoly0148s0008 Marchantia polymorpha HOM05D001588 ORTHO05D002975 5.6e-06 54.3 45 55.6
Nn6g35129 Nelumbo nucifera HOM05D001588 ORTHO05D002975 9.5e-06 53.5 37 62.2
Pp3c9_5670 Physcomitrium patens HOM05D001588 ORTHO05D002975 9.5e-06 53.5 38 55.3


User provided reference genes

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