Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 5.2e-210 734.2 381 100.0
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 1.6e-190 669.5 381 91.3
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 8.6e-165 583.9 387 79.8
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 8.6e-165 583.9 387 79.3
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 8.6e-165 583.9 385 79.7
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 9.0e-154 547.4 418 71.8
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 2.0e-153 546.2 395 74.7
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 1.3e-152 543.5 395 74.2
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 6.0e-150 534.6 391 73.4
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 7.3e-148 527.7 383 72.3
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.1e-146 523.9 385 73.8
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.5e-145 520.0 382 73.6
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 2.2e-144 516.2 392 70.4
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 6.4e-144 514.6 389 71.2
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 8.4e-144 514.2 396 70.5
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 5.6e-140 501.5 373 71.3
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 5.6e-140 501.5 402 67.9
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 6.2e-139 498.0 378 69.3
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 1.2e-137 493.8 385 69.1
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 4.5e-137 491.9 379 70.2
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 2.2e-136 489.6 361 70.6
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 3.8e-136 488.8 376 68.6
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.1e-135 487.3 383 68.1
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 1.1e-135 487.3 385 67.8
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 3.2e-135 485.7 372 70.4
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 4.2e-135 485.3 371 70.1
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 1.6e-134 483.4 364 70.1
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.7e-134 482.6 375 68.3
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 2.7e-134 482.6 369 69.9
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 7.9e-134 481.1 370 68.9
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 7.9e-134 481.1 373 67.6
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 3.9e-133 478.8 387 65.9
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.1e-132 477.2 374 68.2
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 1.1e-132 477.2 382 67.8
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 1.9e-132 476.5 307 79.2
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 2.5e-132 476.1 391 65.2
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 2.5e-132 476.1 365 69.3
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 3.3e-132 475.7 332 72.9
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 1.3e-131 473.8 393 66.4
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.6e-131 473.4 326 74.5
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 3.7e-131 472.2 390 65.1
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 3.7e-131 472.2 372 67.7
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 4.8e-131 471.9 388 65.7
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 4.0e-130 468.8 387 64.3
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.2e-129 467.2 399 63.4
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 1.5e-129 466.8 370 67.0
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 1.0e-125 454.1 382 61.5
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 8.7e-125 451.1 382 63.4
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 2.5e-124 449.5 362 64.9
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 7.4e-124 448.0 365 64.1
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 9.7e-124 447.6 379 62.5
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.8e-123 446.0 331 69.2
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 1.4e-122 443.7 373 63.8
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 3.1e-122 442.6 368 63.0
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.5e-121 440.3 373 63.3
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 2.6e-121 439.5 331 67.7
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.0e-120 437.6 375 62.9
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.0e-120 437.6 375 62.9
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.3e-120 437.2 377 62.3
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 2.2e-120 436.4 355 64.8
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 6.5e-120 434.9 374 62.6
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 6.5e-120 434.9 373 63.0
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 1.1e-119 434.1 386 60.6
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 1.9e-119 433.3 337 67.4
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 4.2e-119 432.2 313 69.3
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 7.2e-119 431.4 256 86.3
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 7.2e-119 431.4 313 75.4
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 1.6e-118 430.3 376 61.2
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.1e-116 424.1 334 67.7
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 2.0e-116 423.3 347 66.3
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 2.2e-115 419.9 319 66.1
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 6.3e-115 418.3 294 72.4
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 2.6e-113 412.9 395 59.0
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 5.9e-113 411.8 325 64.9
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 7.7e-113 411.4 375 61.9
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 2.2e-112 409.8 364 59.3
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 2.9e-112 409.5 364 59.1
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 5.0e-112 408.7 364 59.3
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 9.4e-111 404.4 387 57.9
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 2.3e-109 399.8 379 56.5
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 3.0e-109 399.4 330 64.5
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 5.1e-109 398.7 399 56.9
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 8.8e-109 397.9 385 56.1
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 2.6e-108 396.4 330 63.0
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 3.3e-108 396.0 267 75.7
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 7.4e-108 394.8 399 56.6
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.2e-107 393.3 352 59.1
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 8.2e-107 391.3 305 63.0
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 4.1e-106 389.0 411 53.0
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 9.1e-106 387.9 362 56.6
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.0e-97 360.1 252 71.0
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 4.0e-93 345.9 327 56.9
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 2.0e-92 343.6 299 63.2
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 4.4e-92 342.4 304 55.9
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 2.8e-91 339.7 198 87.9
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 2.7e-89 333.2 250 68.0
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 4.5e-89 332.4 298 55.0
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 4.2e-87 325.9 258 64.7
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.4e-85 320.9 355 53.0
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 3.7e-83 312.8 316 49.4
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 2.7e-81 306.6 306 55.6
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 5.0e-80 302.4 309 51.5
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 4.2e-79 299.3 179 87.7
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.2e-78 297.7 313 48.6
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 3.2e-74 283.1 188 76.1
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.5e-71 274.2 271 58.3
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 1.0e-69 268.1 254 56.3
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.7e-67 259.6 225 60.0
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 9.2e-66 255.0 159 83.0
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 5.0e-64 249.2 200 67.0
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 1.1e-63 248.1 253 56.1
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 8.6e-56 221.9 310 40.6
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 7.8e-49 198.7 330 42.4
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 1.7e-43 181.0 265 40.0
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 3.8e-43 179.9 137 67.9
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 4.6e-41 172.9 303 34.0
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 6.6e-32 142.5 107 67.3
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 5.6e-31 139.4 233 40.8
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 3.4e-28 130.2 128 54.7
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 6.4e-27 125.9 226 42.5
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 5.4e-26 122.9 84 78.6
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 7.9e-25 119.0 84 75.0
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 4.5e-12 76.6 61 60.7
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.7e-11 74.7 100 46.0
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 8.7e-08 62.4 46 69.6
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 7.4e-07 59.3 60 53.3


User provided reference genes

Program Settings