Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 5.4e-40 167.2 82 100.0
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 4.6e-23 110.9 75 72.0
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 3.0e-22 108.2 75 69.3
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 3.0e-22 108.2 75 69.3
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 6.2e-20 100.5 59 76.3
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 3.1e-19 98.2 68 72.1
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 5.3e-19 97.4 58 74.1
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 1.5e-18 95.9 73 68.5
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 1.5e-18 95.9 67 68.7
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 2.6e-18 95.1 76 64.5
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 3.4e-18 94.7 90 60.0
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 3.4e-18 94.7 66 66.7
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 3.4e-18 94.7 81 61.7
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 4.5e-18 94.4 85 58.8
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 5.8e-18 94.0 62 71.0
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 7.6e-18 93.6 61 73.8
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 7.6e-18 93.6 76 61.8
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 1.0e-17 93.2 76 60.5
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 1.3e-17 92.8 77 61.0
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 1.3e-17 92.8 52 80.8
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.7e-17 92.4 68 66.2
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 2.2e-17 92.0 69 63.8
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 2.9e-17 91.7 69 68.1
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 2.9e-17 91.7 69 66.7
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 2.9e-17 91.7 69 66.7
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 3.8e-17 91.3 69 66.7
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 4.9e-17 90.9 81 59.3
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 4.9e-17 90.9 72 63.9
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 8.4e-17 90.1 83 56.6
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 1.1e-16 89.7 69 63.8
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 1.1e-16 89.7 66 65.2
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 1.4e-16 89.4 58 72.4
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 1.4e-16 89.4 77 61.0
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 3.2e-16 88.2 69 65.2
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 3.2e-16 88.2 68 61.8
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 4.2e-16 87.8 82 57.3
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 9.3e-16 86.7 53 73.6
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 9.3e-16 86.7 82 53.7
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 9.3e-16 86.7 57 64.9
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 1.2e-15 86.3 77 55.8
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 1.2e-15 86.3 76 60.5
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 1.2e-15 86.3 76 60.5
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 1.2e-15 86.3 83 55.4
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 1.2e-15 86.3 54 70.4
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 1.6e-15 85.9 78 57.7
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 1.6e-15 85.9 77 54.5
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 1.6e-15 85.9 65 63.1
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 2.1e-15 85.5 58 63.8
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 2.7e-15 85.1 62 64.5
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 2.7e-15 85.1 62 64.5
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 2.7e-15 85.1 62 61.3
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 3.5e-15 84.7 73 54.8
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 4.6e-15 84.3 67 61.2
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 4.6e-15 84.3 65 61.5
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 1.0e-14 83.2 57 61.4
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 1.3e-14 82.8 82 53.7
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 2.3e-14 82.0 63 57.1
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 2.3e-14 82.0 67 59.7
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 2.3e-14 82.0 75 52.0
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 3.9e-14 81.3 60 56.7
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 5.1e-14 80.9 49 73.5
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 8.7e-14 80.1 86 53.5
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 1.1e-13 79.7 65 58.5
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 1.5e-13 79.3 104 45.2
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 2.5e-13 78.6 76 48.7
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 3.3e-13 78.2 71 53.5
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 3.3e-13 78.2 59 55.9
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 5.7e-13 77.4 75 53.3
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 7.4e-13 77.0 68 52.9
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 9.6e-13 76.6 71 54.9
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 2.1e-12 75.5 69 55.1
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 4.8e-12 74.3 44 75.0
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 4.8e-12 74.3 44 75.0
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 4.8e-12 74.3 44 75.0
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 4.8e-12 74.3 52 61.5
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 6.2e-12 73.9 44 72.7
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 8.2e-12 73.6 75 49.3
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 1.1e-11 73.2 52 57.7
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 1.8e-11 72.4 73 50.7
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 1.8e-11 72.4 80 45.0
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 4.0e-11 71.2 50 66.0
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 9.0e-11 70.1 46 63.0
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 4.5e-10 67.8 48 62.5
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 5.8e-10 67.4 44 65.9
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 7.6e-10 67.0 63 57.1
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 5.0e-09 64.3 59 52.5
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 4.2e-08 61.2 65 50.8
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 5.5e-08 60.8 53 56.6
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 7.1e-08 60.5 59 54.2
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 2.1e-07 58.9 37 62.2
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 3.5e-07 58.2 31 77.4
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 3.5e-07 58.2 70 48.6
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 6.7e-06 53.9 62 45.2


User provided reference genes

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