Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G141700 Prunus persica HOM05D001151 ORTHO05D001504 4.7e-55 218.0 144 100.0
FAN22G1580 Fragaria x ananassa HOM05D001151 ORTHO05D001504 4.7e-31 138.3 127 66.9
MD13G1173500 Malus domestica HOM05D001151 ORTHO05D001504 1.5e-29 133.3 127 74.0
FvH4_4g17250 Fragaria vesca HOM05D001151 ORTHO05D001504 2.0e-29 132.9 127 65.4
FAN12G3527 Fragaria x ananassa HOM05D001151 ORTHO05D001504 2.0e-29 132.9 127 65.4
RcHm_v2.0_Chr4g0421171 Rosa chinensis HOM05D001151 ORTHO05D001504 2.6e-29 132.5 128 69.5
MD16G1174700 Malus domestica HOM05D001151 ORTHO05D001504 1.9e-27 126.3 127 69.3
QL06p007531 Quercus lobata HOM05D001151 ORTHO05D001504 2.1e-23 112.8 128 61.7
Cfa015348 Carpinus fangiana HOM05D001151 ORTHO05D001504 2.2e-20 102.8 132 53.8
Duzib151G0042 Durio zibethinus HOM05D001151 ORTHO05D001504 1.1e-19 100.5 97 63.9
CiPaw.01G152600 Carya illinoinensis HOM05D001151 ORTHO05D001504 1.9e-19 99.8 130 50.8
Lalb_Chr13g0303861 Lupinus albus HOM05D001151 ORTHO05D001504 3.2e-19 99.0 132 50.0
Lalb_Chr07g0177571 Lupinus albus HOM05D001151 ORTHO05D001504 1.6e-18 96.7 132 50.0
QL06p007522 Quercus lobata HOM05D001151 ORTHO05D001504 4.6e-18 95.1 130 57.7
CANSAT78G1982 Cannabis sativa HOM05D001151 ORTHO05D001504 1.0e-17 94.0 127 46.5
ClCG05G005810 Citrullus lanatus HOM05D001151 ORTHO05D001504 1.0e-17 94.0 95 64.2
Duzib212G0620 Durio zibethinus HOM05D001151 ORTHO05D001504 1.0e-17 94.0 96 62.5
Lj4g0006946 Lotus japonicus HOM05D001151 ORTHO05D001504 1.3e-17 93.6 87 63.2
CSS0011260 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 2.3e-17 92.8 89 61.8
CSS0017094 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 2.3e-17 92.8 89 61.8
Phvul.003G101100 Phaseolus vulgaris HOM05D001151 ORTHO05D001504 2.3e-17 92.8 127 49.6
PGR004G2765 Punica granatum HOM05D001151 ORTHO05D001504 2.3e-17 92.8 135 53.3
Medtr4g118800 Medicago truncatula HOM05D001151 ORTHO05D001504 3.9e-17 92.0 87 62.1
COL.COLO4_13923 Corchorus olitorius HOM05D001151 ORTHO05D001504 5.1e-17 91.7 137 48.2
Potri.008G205000 Populus trichocarpa HOM05D001151 ORTHO05D001504 1.1e-16 90.5 94 59.6
VMungo1215G0580 Vigna mungo HOM05D001151 ORTHO05D001504 1.5e-16 90.1 127 47.2
CiPaw.02G086200 Carya illinoinensis HOM05D001151 ORTHO05D001504 1.9e-16 89.7 96 56.2
Ca_21548_v3 Cicer arietinum L. HOM05D001151 ORTHO05D001504 2.5e-16 89.4 87 59.8
Dinv38321 Davidia involucrata HOM05D001151 ORTHO05D001504 4.3e-16 88.6 97 58.8
Gohir.A02G046400 Gossypium hirsutum HOM05D001151 ORTHO05D001504 5.6e-16 88.2 96 58.3
Nn4g26011 Nelumbo nucifera HOM05D001151 ORTHO05D001504 5.6e-16 88.2 101 55.4
Actinidia14319 Actinidia chinensis HOM05D001151 ORTHO05D001504 7.3e-16 87.8 97 55.7
Hma1.2p1_0078F.1_g040790 Hydrangea macrophylla HOM05D001151 ORTHO05D001504 7.3e-16 87.8 95 54.7
Thecc.04G278200 Theobroma cacao HOM05D001151 ORTHO05D001504 7.3e-16 87.8 96 60.4
Gohir.D02G052100 Gossypium hirsutum HOM05D001151 ORTHO05D001504 1.6e-15 86.7 95 57.9
Psat4g030520 Pisum sativum HOM05D001151 ORTHO05D001504 2.1e-15 86.3 87 59.8
Actinidia00049 Actinidia chinensis HOM05D001151 ORTHO05D001504 2.8e-15 85.9 97 54.6
Dinv44424 Davidia involucrata HOM05D000611 ORTHO05D000809 2.8e-15 85.9 96 56.2
SalBow2G0349 Salvia bowleyana HOM05D001151 ORTHO05D001504 2.8e-15 85.9 96 56.2
TPR.G14964 Trifolium pratense HOM05D001151 ORTHO05D001504 2.8e-15 85.9 87 59.8
Gorai.005G057400 Gossypium raimondii HOM05D001151 ORTHO05D001504 4.8e-15 85.1 95 56.8
TAR362G1028 Trochodendron aralioides HOM05D001151 ORTHO05D001504 4.8e-15 85.1 133 47.4
Nn3g21312 Nelumbo nucifera HOM05D001151 ORTHO05D001504 6.2e-15 84.7 100 53.0
Sabra08G0157000 Salix brachista HOM05D001151 ORTHO05D001504 8.1e-15 84.3 94 57.4
Manes.15G016400 Manihot esculenta HOM05D001151 ORTHO05D001504 1.4e-14 83.6 134 47.8
Sc13g0003590 Simmondsia chinensis HOM05D001151 ORTHO05D001504 1.4e-14 83.6 97 55.7
CSS0014959 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 1.8e-14 83.2 96 55.2
Glyma.07G251300 Glycine max HOM05D001151 ORTHO05D001504 1.8e-14 83.2 90 57.8
TWI53G0843 Tripterygium wilfordii HOM05D001151 ORTHO05D001504 2.4e-14 82.8 99 57.6
Glyma.13G215500 Glycine max HOM05D001151 ORTHO05D001504 4.0e-14 82.0 94 55.3
LjContig00389g0013761 Lotus japonicus HOM05D001151 ORTHO05D001504 4.0e-14 82.0 91 53.8
Phvul.006G161700 Phaseolus vulgaris HOM05D001151 ORTHO05D001504 4.0e-14 82.0 94 53.2
TWI09G1149 Tripterygium wilfordii HOM05D001151 ORTHO05D001504 4.0e-14 82.0 99 57.6
TWI09G1310 Tripterygium wilfordii HOM05D001151 ORTHO05D001504 4.0e-14 82.0 99 57.6
Peaxi162Scf00386g00921 Petunia axillaris HOM05D001151 ORTHO05D001504 6.9e-14 81.3 95 56.8
Sopen01g029100 Solanum pennellii HOM05D001151 ORTHO05D001504 6.9e-14 81.3 89 56.2
Glyma.17G023000 Glycine max HOM05D001151 ORTHO05D001504 9.0e-14 80.9 90 57.8
Lj6A670T85 Lonicera japonica HOM05D001151 ORTHO05D001504 9.0e-14 80.9 96 58.3
Nitab4.5_0000829g0040 Nicotiana tabacum HOM05D001151 ORTHO05D001504 9.0e-14 80.9 95 53.7
Ciclev10005986m.g Citrus clementina HOM05D001151 ORTHO05D001504 1.2e-13 80.5 94 57.4
Migut.G00205 Erythranthe guttata HOM05D001151 ORTHO05D001504 1.2e-13 80.5 97 54.6
VMungo0540G2050 Vigna mungo HOM05D001151 ORTHO05D001504 1.2e-13 80.5 93 53.8
Cc03_g02290 Coffea canephora HOM05D001151 ORTHO05D001504 2.0e-13 79.7 95 55.8
Rhsim04G0216700 Rhododendron simsii HOM05D001151 ORTHO05D001504 2.6e-13 79.3 96 55.2
MELO3C006608.2 Cucumis melo HOM05D001151 ORTHO05D001504 4.5e-13 78.6 95 55.8
Oeu021625.1 Olea europaea HOM05D001151 ORTHO05D001504 4.5e-13 78.6 95 52.6
Solyc01g067300.3 Solanum lycopersicum HOM05D001151 ORTHO05D001504 5.8e-13 78.2 89 53.9
Actinidia40227 Actinidia chinensis HOM05D001151 ORTHO05D001504 7.6e-13 77.8 95 55.8
MSTRG.10059 Avicennia marina HOM05D001151 ORTHO05D001504 7.6e-13 77.8 96 54.2
Eucgr.B01267 Eucalyptus grandis HOM05D001151 ORTHO05D001504 7.6e-13 77.8 97 53.6
MSTRG.21812 Avicennia marina HOM05D001151 ORTHO05D001504 2.2e-12 76.3 95 55.8
EL10Ac3g06571 Beta vulgaris HOM05D001151 ORTHO05D001504 2.2e-12 76.3 93 53.8
Sed0001505 Sechium edule HOM05D001151 ORTHO05D001504 2.2e-12 76.3 94 57.4
Oeu026200.1 Olea europaea HOM05D001151 ORTHO05D001504 4.9e-12 75.1 95 50.5
CsaV3_3G014160 Cucumis sativus L. HOM05D001151 ORTHO05D001504 6.4e-12 74.7 93 55.9
HanXRQChr13g0410891 Helianthus annuus HOM05D001151 ORTHO05D001504 6.4e-12 74.7 93 51.6
PGSC0003DMG400022659 Solanum tuberosum HOM05D001151 ORTHO05D001504 6.4e-12 74.7 89 52.8
vmacro15255 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 8.4e-12 74.3 91 50.5
vmacro22598 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 8.4e-12 74.3 91 50.5
Aqoxy2G03101 Aquilegia oxysepala HOM05D001151 ORTHO05D001504 1.1e-11 73.9 94 51.1
arahy.Tifrunner.gnm1.ann1.664S68 Arachis hypogaea HOM05D001151 ORTHO05D001504 1.1e-11 73.9 92 50.0
DCAR_002445 Daucus carota HOM05D001151 ORTHO05D001504 1.1e-11 73.9 134 44.8
CDE02G4221 Ceratophyllum demersum HOM05D001151 ORTHO05D001504 1.4e-11 73.6 103 47.6
arahy.Tifrunner.gnm1.ann1.80N87M Arachis hypogaea HOM05D001151 ORTHO05D001504 2.4e-11 72.8 92 48.9
BcaC06g33419 Brassica carinata HOM05D001151 ORTHO05D001504 2.4e-11 72.8 92 53.3
A03p49200 Brassica napus HOM05D001151 ORTHO05D001504 2.4e-11 72.8 92 53.3
BraA03t14019Z Brassica rapa HOM05D001151 ORTHO05D001504 2.4e-11 72.8 92 53.3
AUR62041204 Chenopodium quinoa HOM05D001151 ORTHO05D001504 2.4e-11 72.8 92 50.0
MSTRG.3950 Avicennia marina HOM05D001151 ORTHO05D001504 3.2e-11 72.4 94 51.1
Eucgr.H03772 Eucalyptus grandis HOM05D001151 ORTHO05D001504 3.2e-11 72.4 92 54.3
SGA_v2.0_scaffold86G26832 Striga asiatica HOM05D001151 ORTHO05D001504 3.2e-11 72.4 95 50.5
HanXRQChr13g0410881 Helianthus annuus HOM05D001151 ORTHO05D001504 1.2e-10 70.5 94 47.9
HanXRQChr03g0080171 Helianthus annuus HOM05D001151 ORTHO05D001504 1.6e-10 70.1 93 49.5
MBI19_g30847_MAGBIO Magnolia biondii HOM05D001151 ORTHO05D001504 1.6e-10 70.1 138 38.4
HanXRQChr03g0080161 Helianthus annuus HOM05D001151 ORTHO05D001504 2.1e-10 69.7 93 53.8
THA.LOC104820241 Tarenaya hassleriana HOM05D001151 ORTHO05D001504 2.7e-10 69.3 92 54.3
Lsat_1_v5_gn_5_50161 Lactuca sativa HOM05D001151 ORTHO05D001504 3.5e-10 68.9 95 49.5
MSTRG.24778 Avicennia marina HOM05D001151 ORTHO05D001504 6.0e-10 68.2 90 52.2
Cpa.g.sc16.115 Carica papaya HOM05D001151 ORTHO05D001504 6.0e-10 68.2 133 43.6
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 7.9e-10 67.8 95 49.5
ECA240G4474 Erigeron canadensis HOM05D001151 ORTHO05D001504 7.9e-10 67.8 129 38.8
HanXRQChr03g0080151 Helianthus annuus HOM05D001151 ORTHO05D001504 7.9e-10 67.8 93 46.2
vmacro08199 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 7.9e-10 67.8 118 45.8
Thhalv10026308m.g Eutrema salsugineum HOM05D001151 ORTHO05D001504 1.0e-09 67.4 93 51.6
SGA_v2.0_scaffold57G20237 Striga asiatica HOM05D001151 ORTHO05D001504 1.0e-09 67.4 95 47.4
AT3G06390 Arabidopsis thaliana HOM05D001151 ORTHO05D001504 1.3e-09 67.0 133 36.8
CARHR080920 Cardamine hirsuta HOM05D001151 ORTHO05D001504 1.3e-09 67.0 94 44.7
DCAR_024610 Daucus carota HOM05D001151 ORTHO05D001504 1.3e-09 67.0 94 45.7
AL7G39840 Arabidopsis lyrata HOM05D001151 ORTHO05D001504 1.8e-09 66.6 94 46.8
BcaC05g30031 Brassica carinata HOM05D001151 ORTHO05D001504 1.8e-09 66.6 94 39.4
Carub.0007s2620 Capsella rubella HOM05D001151 ORTHO05D001504 1.8e-09 66.6 95 48.4
BcaC06g32947 Brassica carinata HOM05D001151 ORTHO05D001504 2.3e-09 66.2 92 51.1
Sp3g05310 Schrenkiella parvula HOM05D001151 ORTHO05D001504 3.9e-09 65.5 94 42.6
DCAR_024546 Daucus carota HOM05D001151 ORTHO05D001504 5.1e-09 65.1 94 47.9
Thhalv10021548m.g Eutrema salsugineum HOM05D001151 ORTHO05D001504 5.1e-09 65.1 135 43.0
THA.LOC104818843 Tarenaya hassleriana HOM05D001151 ORTHO05D001504 5.1e-09 65.1 94 45.7
AT4G15610 Arabidopsis thaliana HOM05D001151 ORTHO05D001504 6.7e-09 64.7 94 45.7
DCAR_024545 Daucus carota HOM05D001151 ORTHO05D001504 6.7e-09 64.7 94 48.9
DCAR_024548 Daucus carota HOM05D001151 ORTHO05D001504 6.7e-09 64.7 96 45.8
BcaC05g29813 Brassica carinata HOM05D001151 ORTHO05D001504 8.7e-09 64.3 100 37.0
C05p60850 Brassica napus HOM05D001151 ORTHO05D001504 8.7e-09 64.3 100 37.0
BolC5t34742H Brassica oleracea HOM05D001151 ORTHO05D001504 8.7e-09 64.3 100 37.0
HPP92_010733 Vanilla planifolia HOM05D001151 ORTHO05D001504 1.1e-08 63.9 93 47.3
MBI18_g31498_MAGBIO Magnolia biondii HOM05D001151 ORTHO05D001504 1.5e-08 63.5 95 44.2
GSVIVG01017796001 Vitis vinifera HOM05D001151 ORTHO05D001504 1.5e-08 63.5 57 63.2
AL3G17340 Arabidopsis lyrata HOM05D001151 ORTHO05D001504 1.9e-08 63.2 133 35.3
HanXRQChr03g0080181 Helianthus annuus HOM05D001151 ORTHO05D001504 1.9e-08 63.2 101 43.6
HanXRQChr12g0366261 Helianthus annuus HOM05D001151 ORTHO05D001504 2.5e-08 62.8 95 48.4
DCAR_024605 Daucus carota HOM05D001151 ORTHO05D001504 3.3e-08 62.4 87 50.6
Gohir.A09G233500 Gossypium hirsutum HOM05D001151 ORTHO05D001504 3.3e-08 62.4 96 46.9
Atru.chr4.2759 Acer truncatum HOM05D001151 ORTHO05D001504 4.3e-08 62.0 72 56.9
A05p41640 Brassica napus HOM05D001151 ORTHO05D001504 4.3e-08 62.0 94 39.4
BraA05t22883Z Brassica rapa HOM05D001151 ORTHO05D001504 4.3e-08 62.0 94 39.4
Aa31LG5G16910 Aethionema arabicum HOM05D001151 ORTHO05D001504 5.6e-08 61.6 94 42.6
CARHR290010 Cardamine hirsuta HOM05D001151 ORTHO05D001504 7.4e-08 61.2 94 45.7
Gorai.006G257500 Gossypium raimondii HOM05D001151 ORTHO05D001504 7.4e-08 61.2 96 46.9
SHI00298 Sapria himalayana HOM05D001151 ORTHO05D001504 1.3e-07 60.5 96 42.7
Hund20579 Selenicereus undatus HOM05D001151 ORTHO05D001504 1.6e-07 60.1 84 47.6
Ciclev10006955m.g Citrus clementina HOM05D001151 ORTHO05D001504 2.1e-07 59.7 53 67.9
Lsat_1_v5_gn_5_51120 Lactuca sativa HOM05D001151 ORTHO05D001504 2.1e-07 59.7 93 44.1
Carub.0003s0583 Capsella rubella HOM05D001151 ORTHO05D001504 2.8e-07 59.3 100 41.0
Gohir.D09G234600 Gossypium hirsutum HOM05D001151 ORTHO05D001504 2.8e-07 59.3 96 45.8
Lsat_1_v5_gn_5_50201 Lactuca sativa HOM05D001151 ORTHO05D001504 3.7e-07 58.9 94 43.6
SGA_v2.0_scaffold175G39319 Striga asiatica HOM05D001151 ORTHO05D001504 8.1e-07 57.8 146 34.2
HPP92_018398 Vanilla planifolia HOM05D001151 ORTHO05D001504 8.1e-07 57.8 96 41.7
Lsat_1_v5_gn_5_51020 Lactuca sativa HOM05D001151 ORTHO05D001504 1.1e-06 57.4 93 43.0
ATR0706G150 Amborella trichopoda HOM05D001151 ORTHO05D001504 2.4e-06 56.2 98 42.9
Lsat_1_v5_gn_5_50121 Lactuca sativa HOM05D001151 ORTHO05D001504 2.4e-06 56.2 95 40.0
Haze_01261 Corylus avellana HOM05D001151 ORTHO05D001504 4.0e-06 55.5 43 67.4
Lsat_1_v5_gn_5_50820 Lactuca sativa HOM05D001151 ORTHO05D001504 5.3e-06 55.1 95 41.1
arahy.Tifrunner.gnm1.ann1.8C0M2R Arachis hypogaea HOM05D001151 ORTHO05D001504 9.0e-06 54.3 43 67.4
arahy.Tifrunner.gnm1.ann1.WJ8WCF Arachis hypogaea HOM05D001151 ORTHO05D001504 9.0e-06 54.3 43 67.4


User provided reference genes

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