Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 4.4e-228 794.3 401 100.0
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 4.5e-196 688.0 402 85.8
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.1e-194 683.3 402 85.8
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 2.0e-172 609.4 400 75.2
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 8.8e-168 594.0 402 75.9
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.6e-161 573.2 401 71.3
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.6e-159 565.8 398 73.4
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.0e-156 556.2 412 70.4
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.5e-156 555.4 406 71.4
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 1.0e-155 553.9 398 72.4
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 7.2e-154 547.7 412 67.7
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.4e-151 538.9 424 68.2
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.2e-150 536.2 400 68.5
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 1.2e-148 530.4 398 67.1
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 3.5e-148 528.9 405 64.2
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.5e-146 523.5 412 65.5
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 2.5e-146 522.7 398 65.8
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 3.2e-146 522.3 406 64.5
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.0e-144 517.3 408 65.2
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 3.4e-143 512.3 399 65.9
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 7.5e-143 511.1 398 65.6
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 9.8e-143 510.8 464 59.9
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.0e-140 503.1 404 65.8
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.3e-139 499.6 399 64.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 1.1e-138 497.3 331 74.9
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.5e-138 496.1 370 67.0
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 2.5e-138 496.1 398 65.1
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 5.6e-138 495.0 398 63.6
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 9.5e-138 494.2 398 64.6
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 2.1e-137 493.0 398 63.6
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 6.8e-136 488.0 396 64.9
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.2e-135 487.3 349 70.2
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.5e-135 486.9 398 62.3
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.6e-135 486.1 389 64.5
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 5.7e-135 485.0 398 61.8
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.7e-134 483.4 398 62.1
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 2.2e-134 483.0 400 59.2
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 2.9e-134 482.6 404 60.1
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.4e-133 480.3 401 61.8
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.8e-133 479.9 402 59.0
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 3.2e-133 479.2 400 60.0
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 9.2e-133 477.6 398 61.8
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.2e-132 477.2 401 59.6
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.6e-132 476.9 398 62.6
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 7.8e-132 474.6 326 72.4
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.0e-131 474.2 405 58.8
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.3e-131 473.8 400 61.0
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 1.7e-131 473.4 399 59.6
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 1.7e-131 473.4 399 59.6
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 3.9e-131 472.2 411 60.1
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.1e-130 470.7 405 58.5
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.5e-130 470.3 403 60.5
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.9e-130 469.9 409 59.2
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.5e-130 469.5 398 60.3
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 3.3e-130 469.2 383 61.4
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 9.5e-130 467.6 406 60.3
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.1e-129 466.5 400 57.5
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 2.1e-129 466.5 401 57.9
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.8e-129 466.1 412 59.0
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.7e-129 465.3 400 58.8
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.7e-129 465.3 404 59.9
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 6.2e-129 464.9 399 58.1
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.0e-128 464.2 341 66.9
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.4e-128 463.8 399 57.9
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.0e-127 459.9 327 65.4
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.6e-127 459.5 405 56.8
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.4e-127 458.8 335 66.9
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 9.8e-127 457.6 400 58.0
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 9.8e-127 457.6 410 57.6
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.1e-125 454.1 400 57.5
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.4e-125 453.8 301 72.1
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.4e-125 453.8 400 57.5
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 9.2e-125 451.1 410 58.3
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.6e-124 450.3 335 68.4
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.7e-124 449.5 326 67.8
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 2.3e-123 446.4 405 57.0
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 6.6e-123 444.9 409 58.9
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.9e-122 443.4 342 66.7
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 2.5e-122 443.0 306 68.0
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 7.3e-122 441.4 343 62.7
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 7.3e-122 441.4 365 60.3
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 9.5e-122 441.0 320 65.6
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 9.5e-122 441.0 399 54.9
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 4.7e-121 438.7 398 57.0
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.0e-119 433.3 396 55.8
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 2.6e-119 433.0 394 57.9
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 3.4e-119 432.6 394 57.1
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 3.4e-119 432.6 392 54.6
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 5.8e-119 431.8 399 54.9
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 3.2e-117 426.0 326 62.3
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.6e-116 423.7 318 69.2
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 2.1e-116 423.3 410 55.6
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 2.1e-113 413.3 391 54.7
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 3.6e-113 412.5 392 55.6
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 6.2e-113 411.8 422 53.1
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 8.9e-112 407.9 389 54.5
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.9e-110 402.9 403 52.9
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 9.2e-109 397.9 348 58.9
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 3.5e-108 396.0 411 55.0
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.5e-106 390.6 357 55.2
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 3.6e-105 386.0 330 57.9
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.1e-104 384.4 396 50.0
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 9.9e-103 377.9 320 58.4
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.0e-95 353.6 279 65.6
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.6e-95 353.2 284 62.7
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 3.0e-91 339.7 309 56.6
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 8.7e-91 338.2 456 44.3
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 2.1e-89 333.6 305 56.4
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.5e-87 327.4 228 70.2
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 7.1e-85 318.5 277 57.8
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 2.7e-84 316.6 371 48.5
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.5e-84 316.2 401 47.6
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 8.7e-83 311.6 277 58.5
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 8.2e-73 278.5 351 46.7
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 5.1e-67 259.2 282 53.2
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 2.4e-56 223.8 265 45.7
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.0e-46 191.8 133 70.7
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.5e-45 187.2 254 44.5
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 2.1e-44 184.1 123 69.1
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 2.4e-40 170.6 181 47.0
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 3.5e-39 166.8 122 66.4
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.6e-36 156.8 313 31.0
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 3.0e-35 153.7 320 29.1
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 3.8e-30 136.7 102 71.6
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 5.2e-27 126.3 76 73.7
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 5.2e-27 126.3 150 43.3
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 9.8e-26 122.1 213 36.6
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.7e-25 121.3 283 26.5
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 6.3e-25 119.4 211 39.8
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.1e-24 118.6 90 67.8
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 3.1e-24 117.1 91 64.8
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.5e-23 113.6 68 76.5
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 7.3e-21 105.9 111 48.6
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 2.8e-20 104.0 249 27.7
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.5e-18 98.2 70 72.9
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.8e-16 91.3 74 62.2
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 8.9e-11 72.4 400 22.2
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.2e-09 67.8 40 67.5
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 3.7e-09 67.0 112 38.4
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 3.7e-09 67.0 112 38.4
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 7.8e-07 59.3 59 54.2


User provided reference genes

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