Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G138200 Prunus persica HOM05D006081 ORTHO05D007628 5.3e-105 384.4 200 100.0
MD16G1171400 Malus domestica HOM05D006081 ORTHO05D007628 6.9e-81 304.3 198 81.3
RcHm_v2.0_Chr4g0421971 Rosa chinensis HOM05D006081 ORTHO05D007628 5.9e-72 274.6 201 73.1
FAN17G1774 Fragaria x ananassa HOM05D006081 ORTHO05D007628 3.9e-68 261.9 203 71.4
FvH4_4g17860 Fragaria vesca HOM05D006081 ORTHO05D007628 4.4e-67 258.5 201 71.1
Cfa015373 Carpinus fangiana HOM05D006081 ORTHO05D007628 5.7e-67 258.1 199 66.8
FAN07G2255 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.2e-66 256.1 202 69.8
FAN12G2613 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.2e-66 256.1 201 70.6
CiPaw.02G083900 Carya illinoinensis HOM05D006081 ORTHO05D007628 5.9e-64 248.1 202 67.3
CiPaw.01G149700 Carya illinoinensis HOM05D006081 ORTHO05D007628 7.2e-62 241.1 201 65.7
Phvul.009G246800 Phaseolus vulgaris HOM05D006081 ORTHO05D007628 9.4e-62 240.7 201 64.7
VMungo1309G0529 Vigna mungo HOM05D006081 ORTHO05D007628 2.1e-61 239.6 201 64.2
Lj6g0000146 Lotus japonicus HOM05D006081 ORTHO05D007628 8.0e-61 237.7 200 64.0
Manes.15G013500 Manihot esculenta HOM05D006081 ORTHO05D007628 5.2e-60 235.0 202 62.9
QL06p008580 Quercus lobata HOM05D006081 ORTHO05D007628 1.2e-59 233.8 200 65.0
Cc00_g10580 Coffea canephora HOM05D006081 ORTHO05D007628 9.7e-59 230.7 198 63.6
Medtr2g436940 Medicago truncatula HOM05D006081 ORTHO05D007628 2.2e-58 229.6 203 59.6
SGA_v2.0_scaffold55G19699 Striga asiatica HOM05D006081 ORTHO05D007628 4.8e-58 228.4 200 64.5
Cpa.g.sc16.161 Carica papaya HOM05D006081 ORTHO05D007628 6.3e-58 228.0 198 60.6
CSS0030149 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 1.1e-57 227.3 198 61.1
Glyma.15G153100 Glycine max HOM05D006081 ORTHO05D007628 1.1e-57 227.3 200 60.5
PGR031G1107 Punica granatum HOM05D006081 ORTHO05D007628 1.1e-57 227.3 200 60.5
TAR636G3617 Trochodendron aralioides HOM05D006081 ORTHO05D007628 1.1e-57 227.3 197 63.5
Dinv29771 Davidia involucrata HOM05D006081 ORTHO05D007628 1.4e-57 226.9 198 62.1
Manes.03G194000 Manihot esculenta HOM05D006081 ORTHO05D007628 1.4e-57 226.9 197 61.9
arahy.Tifrunner.gnm1.ann1.TA2ZSY Arachis hypogaea HOM05D006081 ORTHO05D007628 1.8e-57 226.5 197 61.4
arahy.Tifrunner.gnm1.ann1.EZB5Q6 Arachis hypogaea HOM05D006081 ORTHO05D007628 9.1e-57 224.2 197 60.9
Potri.008G210100 Populus trichocarpa HOM05D006081 ORTHO05D007628 9.1e-57 224.2 199 63.3
Atru.chr4.2827 Acer truncatum HOM05D006081 ORTHO05D007628 2.0e-56 223.0 192 63.0
Duzib151G0152 Durio zibethinus HOM05D006081 ORTHO05D007628 2.0e-56 223.0 198 61.6
Thecc.04G283000 Theobroma cacao HOM05D006081 ORTHO05D007628 2.0e-56 223.0 196 62.2
Ca_01966_v3 Cicer arietinum L. HOM05D006081 ORTHO05D007628 2.7e-56 222.6 200 60.5
vmacro08134 Vaccinium macrocarpon HOM05D006081 ORTHO05D007628 2.7e-56 222.6 198 61.6
Glyma.09G045900 Glycine max HOM05D006081 ORTHO05D007628 5.9e-56 221.5 201 60.7
Rhsim04G0220300 Rhododendron simsii HOM05D006081 ORTHO05D007628 7.7e-56 221.1 201 60.7
Gohir.D02G054100 Gossypium hirsutum HOM05D006081 ORTHO05D007628 1.3e-55 220.3 198 59.1
Gorai.005G059600 Gossypium raimondii HOM05D006081 ORTHO05D007628 1.3e-55 220.3 198 59.1
CANSAT78G1428 Cannabis sativa HOM05D006081 ORTHO05D007628 2.2e-55 219.5 200 60.5
GSVIVG01017744001 Vitis vinifera HOM05D006081 ORTHO05D007628 2.2e-55 219.5 198 59.1
Eucgr.H03897 Eucalyptus grandis HOM05D006081 ORTHO05D007628 2.9e-55 219.2 199 61.3
Sabra08G0154300 Salix brachista HOM05D006081 ORTHO05D007628 3.8e-55 218.8 202 60.9
Actinidia40266 Actinidia chinensis HOM05D006081 ORTHO05D007628 5.0e-55 218.4 196 61.2
Lalb_Chr18g0051761 Lupinus albus HOM05D006081 ORTHO05D007628 6.5e-55 218.0 199 59.8
CsaV3_6G017270 Cucumis sativus L. HOM05D006081 ORTHO05D007628 8.5e-55 217.6 198 58.6
MSTRG.21799 Avicennia marina HOM05D006081 ORTHO05D007628 2.5e-54 216.1 199 61.3
Psat1g153280 Pisum sativum HOM05D006081 ORTHO05D007628 3.2e-54 215.7 200 57.5
Gohir.A02G048800 Gossypium hirsutum HOM05D006081 ORTHO05D007628 4.2e-54 215.3 198 59.1
Lalb_Chr20g0114491 Lupinus albus HOM05D006081 ORTHO05D007628 7.2e-54 214.5 202 58.9
TWI53G0242 Tripterygium wilfordii HOM05D006081 ORTHO05D007628 7.2e-54 214.5 201 59.7
MELO3C021343.2 Cucumis melo HOM05D006081 ORTHO05D007628 9.4e-54 214.2 198 57.6
ClCG06G005230 Citrullus lanatus HOM05D006081 ORTHO05D007628 1.6e-53 213.4 197 58.4
SalBow5G1281 Salvia bowleyana HOM05D006081 ORTHO05D007628 8.0e-53 211.1 201 57.7
Ciclev10005978m.g Citrus clementina HOM05D006081 ORTHO05D007628 1.4e-52 210.3 200 59.0
Peaxi162Scf00534g00212 Petunia axillaris HOM05D006081 ORTHO05D007628 2.3e-52 209.5 198 56.6
Migut.N00097 Erythranthe guttata HOM05D006081 ORTHO05D007628 4.0e-52 208.8 200 59.0
FAN12G2474 Fragaria x ananassa HOM05D006081 ORTHO05D007628 8.8e-52 207.6 114 88.6
Lj6A673G88 Lonicera japonica HOM05D006081 ORTHO05D007628 8.8e-52 207.6 135 73.3
PSO170G3586 Papaver somniferum HOM05D006081 ORTHO05D007628 2.6e-51 206.1 196 58.2
TAR365G0221 Trochodendron aralioides HOM05D006081 ORTHO05D007628 2.6e-51 206.1 170 62.9
Sc13g0003510 Simmondsia chinensis HOM05D006081 ORTHO05D007628 3.4e-51 205.7 199 56.8
HanXRQChr03g0079991 Helianthus annuus HOM05D006081 ORTHO05D007628 5.7e-51 204.9 199 55.8
Nitab4.5_0003972g0010 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.3e-50 203.8 197 58.4
MBI19_g30830_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 1.7e-50 203.4 201 56.2
PSO210G2816 Papaver somniferum HOM05D006081 ORTHO05D007628 1.7e-50 203.4 196 56.6
Thhalv10021583m.g Eutrema salsugineum HOM05D006081 ORTHO05D007628 2.2e-50 203.0 196 56.6
ECA240G0281 Erigeron canadensis HOM05D006081 ORTHO05D007628 4.8e-50 201.8 201 55.2
Nitab4.5_0003749g0060 Nicotiana tabacum HOM05D006081 ORTHO05D007628 6.3e-50 201.4 197 58.9
Oeu027733.1 Olea europaea HOM05D006081 ORTHO05D007628 6.3e-50 201.4 198 56.6
Sed0014998 Sechium edule HOM05D006081 ORTHO05D007628 8.3e-50 201.1 197 55.8
PGSC0003DMG400022662 Solanum tuberosum HOM05D006081 ORTHO05D007628 1.1e-49 200.7 197 54.8
CARHR097370 Cardamine hirsuta HOM05D006081 ORTHO05D007628 1.4e-49 200.3 198 58.1
Solyc01g067080.3 Solanum lycopersicum HOM05D006081 ORTHO05D007628 1.4e-49 200.3 197 52.8
Lsat_1_v5_gn_5_49301 Lactuca sativa HOM05D006081 ORTHO05D007628 1.8e-49 199.9 199 54.3
Sopen01g028790 Solanum pennellii HOM05D006081 ORTHO05D007628 1.8e-49 199.9 197 54.3
C03p51690 Brassica napus HOM05D006081 ORTHO05D007628 5.4e-49 198.4 196 55.1
DCAR_030534 Daucus carota HOM05D006081 ORTHO05D007628 5.4e-49 198.4 199 53.8
AL3G35480 Arabidopsis lyrata HOM05D006081 ORTHO05D007628 9.1e-49 197.6 197 56.9
Aa31LG8G8110 Aethionema arabicum HOM05D006081 ORTHO05D007628 1.2e-48 197.2 198 55.6
THA.LOC104820251 Tarenaya hassleriana HOM05D006081 ORTHO05D007628 2.0e-48 196.4 196 54.1
BcaB04g19166 Brassica carinata HOM05D006081 ORTHO05D007628 2.7e-48 196.1 196 54.1
BcaC01g03506 Brassica carinata HOM05D006081 ORTHO05D007628 2.7e-48 196.1 196 54.6
BolC3t17454H Brassica oleracea HOM05D006081 ORTHO05D007628 2.7e-48 196.1 196 54.6
Sp3g19430 Schrenkiella parvula HOM05D006081 ORTHO05D007628 3.5e-48 195.7 196 55.1
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 4.5e-48 195.3 129 71.3
Carub.0003s2143 Capsella rubella HOM05D006081 ORTHO05D007628 3.8e-47 192.2 199 53.8
AT3G21400 Arabidopsis thaliana HOM05D006081 ORTHO05D007628 5.0e-47 191.8 197 55.3
Oeu023291.2 Olea europaea HOM05D006081 ORTHO05D007628 4.2e-46 188.7 237 48.1
unitig_26.g10542 Utricularia gibba HOM05D006081 ORTHO05D007628 5.5e-46 188.3 199 53.8
A03p42230 Brassica napus HOM05D006081 ORTHO05D007628 2.8e-45 186.0 196 52.6
BraA03t13376Z Brassica rapa HOM05D006081 ORTHO05D007628 2.8e-45 186.0 196 52.6
BcaB06g26235 Brassica carinata HOM05D006081 ORTHO05D007628 6.1e-45 184.9 196 54.6
BcaC05g28170 Brassica carinata HOM05D006081 ORTHO05D007628 5.2e-44 181.8 196 52.6
C05p42070 Brassica napus HOM05D006081 ORTHO05D007628 5.2e-44 181.8 196 52.6
BolC5t32937H Brassica oleracea HOM05D006081 ORTHO05D007628 5.2e-44 181.8 196 52.6
MD13G1169900 Malus domestica HOM05D006081 ORTHO05D007628 6.8e-44 181.4 136 74.3
AUR62043167 Chenopodium quinoa HOM05D006081 ORTHO05D007628 2.6e-43 179.5 127 63.0
Aqoxy2G03026 Aquilegia oxysepala HOM05D006081 ORTHO05D007628 9.8e-43 177.6 131 68.7
EL10Ac3g06586 Beta vulgaris HOM05D006081 ORTHO05D007628 3.7e-42 175.6 200 46.5
CSS0018730 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 1.4e-41 173.7 113 70.8
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 1.2e-40 170.6 196 49.5
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 1.2e-40 170.6 197 50.3
CAN.G556.12 Capsicum annuum HOM05D006081 ORTHO05D007628 1.0e-39 167.5 111 72.1
AUR62036825 Chenopodium quinoa HOM05D006081 ORTHO05D007628 2.9e-39 166.0 127 60.6
ATR0706G092 Amborella trichopoda HOM05D006081 ORTHO05D007628 6.6e-39 164.9 127 66.9
A05p27230 Brassica napus HOM05D006081 ORTHO05D007628 2.6e-35 152.9 180 49.4
BraA05t21612Z Brassica rapa HOM05D006081 ORTHO05D007628 2.6e-35 152.9 104 68.3
Os12g0540700 Oryza sativa ssp. japonica HOM05D006081 ORTHO05D007628 2.0e-32 143.3 192 45.3
SEGI_25455 Sequoiadendron giganteum HOM05D006081 ORTHO05D007628 4.6e-32 142.1 193 46.1
Haze_01224 Corylus avellana HOM05D006081 ORTHO05D007628 1.7e-31 140.2 81 79.0
TAR365G0700 Trochodendron aralioides HOM05D006081 ORTHO05D007628 5.0e-31 138.7 93 69.9
Zm00001eb410420 Zea mays HOM05D006081 ORTHO05D007628 6.6e-31 138.3 196 41.8
HPP92_001321 Vanilla planifolia HOM05D006081 ORTHO05D007628 1.8e-28 130.2 204 43.1
Actinidia01470 Actinidia chinensis HOM05D006081 ORTHO05D007628 4.0e-28 129.0 198 44.9
MBI19_g12810_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 4.0e-28 129.0 98 58.2
AUR62038616 Chenopodium quinoa HOM05D006081 ORTHO05D007628 2.0e-27 126.7 94 58.5
CSS0011440 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 4.1e-25 119.0 111 56.8
Potri.010G024000 Populus trichocarpa HOM05D006081 ORTHO05D007628 1.9e-22 110.2 64 76.6
Pp3c1_29830 Physcomitrium patens HOM05D006081 ORTHO05D007628 3.7e-18 95.9 122 43.4
Haze_01225 Corylus avellana HOM05D006081 ORTHO05D007628 6.4e-18 95.1 106 55.7
Mapoly0041s0011 Marchantia polymorpha HOM05D006081 ORTHO05D007628 1.0e-15 87.8 120 40.8
FAN22G0279 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.3e-15 87.4 105 56.2
Nn5g30060 Nelumbo nucifera HOM05D006081 ORTHO05D007628 2.1e-13 80.1 110 49.1
AagrBONN_evm.TU.Sc2ySwM_368.2309 Anthoceros agrestis HOM05D006081 ORTHO05D007628 4.7e-13 79.0 184 30.4
CBR_g29894 Chara braunii HOM05D008095 ORTHO05D010826 2.2e-10 70.1 115 31.3
BolC7t43135H Brassica oleracea HOM05D006081 ORTHO05D033520 3.5e-08 62.8 39 74.4
arahy.Tifrunner.gnm1.ann1.LB6QPX Arachis hypogaea HOM05D006081 ORTHO05D007628 7.8e-08 61.6 39 74.4


User provided reference genes

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