Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 9.3e-25 116.7 91 100.0
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.9e-17 92.4 91 72.5
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 4.2e-17 91.3 88 59.1
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.2e-16 89.7 87 88.5
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.4e-15 86.3 87 86.2
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.3e-15 85.5 86 55.8
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.0e-15 85.1 91 54.9
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 5.1e-15 84.3 76 59.2
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 1.1e-14 83.2 87 82.8
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.1e-14 83.2 101 52.5
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.5e-14 82.8 98 62.2
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.5e-14 82.8 80 55.0
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.5e-14 82.8 86 57.0
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 2.5e-14 82.0 82 89.0
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 2.5e-14 82.0 88 53.4
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 3.3e-14 81.6 86 54.7
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.3e-14 81.3 87 82.8
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 5.7e-14 80.9 86 61.6
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 7.4e-14 80.5 87 54.0
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 7.4e-14 80.5 87 50.6
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 7.4e-14 80.5 88 72.7
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 7.4e-14 80.5 86 53.5
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 9.7e-14 80.1 88 83.0
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.3e-13 79.7 87 51.7
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 2.2e-13 79.0 87 52.9
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.2e-13 79.0 78 88.5
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.8e-13 77.8 84 72.6
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 8.2e-13 77.0 80 71.2
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.1e-12 76.6 88 52.3
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.4e-12 76.3 88 81.8
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 3.1e-12 75.1 88 51.1
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 6.9e-12 73.9 88 50.0
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 6.9e-12 73.9 87 52.9
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 9.1e-12 73.6 88 48.9
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 9.1e-12 73.6 82 84.1
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 9.1e-12 73.6 74 54.1
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.0e-11 72.4 114 44.7
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 2.0e-11 72.4 71 91.5
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 3.4e-11 71.6 92 51.1
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.4e-11 71.6 90 77.8
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 4.5e-11 71.2 101 44.6
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 4.5e-11 71.2 88 75.0
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 5.9e-11 70.9 88 75.0
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 7.7e-11 70.5 87 74.7
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 7.7e-11 70.5 86 52.3
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.0e-10 70.1 83 49.4
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 1.0e-10 70.1 87 78.2
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.3e-10 69.7 87 50.6
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.3e-10 69.7 86 51.2
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.7e-10 69.3 92 45.7
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 2.2e-10 68.9 83 51.8
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 2.2e-10 68.9 86 50.0
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.2e-10 68.9 88 56.8
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.9e-10 68.6 87 50.6
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.8e-10 68.2 74 86.5
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 5.0e-10 67.8 86 48.8
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 6.5e-10 67.4 88 50.0
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 6.5e-10 67.4 91 47.3
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 1.1e-09 66.6 90 76.7
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 1.1e-09 66.6 88 48.9
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-09 66.6 88 59.1
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 1.9e-09 65.9 80 48.8
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.9e-09 65.9 87 72.4
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 1.9e-09 65.9 87 78.2
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 2.5e-09 65.5 88 50.0
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.5e-09 65.5 80 48.8
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.5e-09 65.5 80 48.8
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.2e-09 65.1 86 46.5
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 3.2e-09 65.1 109 39.4
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 4.2e-09 64.7 89 50.6
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 4.2e-09 64.7 105 41.9
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 4.2e-09 64.7 76 82.9
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 4.2e-09 64.7 105 39.0
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 4.2e-09 64.7 105 39.0
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 5.5e-09 64.3 88 59.1
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.5e-09 64.3 88 72.7
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.5e-09 64.3 88 72.7
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 7.2e-09 63.9 80 78.8
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 9.4e-09 63.5 83 49.4
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 9.4e-09 63.5 106 44.3
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.2e-08 63.2 87 48.3
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 1.6e-08 62.8 94 44.7
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.6e-08 62.8 70 50.0
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.7e-08 62.0 87 72.4
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 3.6e-08 61.6 89 43.8
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.6e-08 61.6 88 43.2
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 3.6e-08 61.6 72 51.4
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 4.7e-08 61.2 79 46.8
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.7e-08 61.2 88 69.3
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 4.7e-08 61.2 31 90.3
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 4.7e-08 61.2 31 90.3
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 4.7e-08 61.2 117 36.8
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 4.7e-08 61.2 31 93.5
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 6.1e-08 60.8 31 90.3
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 1.0e-07 60.1 31 90.3
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.0e-07 60.1 76 80.3
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.4e-07 59.7 31 90.3
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 1.4e-07 59.7 104 44.2
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.4e-07 59.7 129 34.9
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 1.4e-07 59.7 87 43.7
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-07 59.7 88 69.3
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-07 59.7 88 69.3
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.4e-07 59.7 31 90.3
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.8e-07 59.3 114 37.7
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.3e-07 58.9 88 43.2
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 2.3e-07 58.9 94 42.6
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 2.3e-07 58.9 31 90.3
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 3.0e-07 58.5 31 90.3
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 3.0e-07 58.5 112 38.4
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 3.9e-07 58.2 134 34.3
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 3.9e-07 58.2 86 43.0
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 5.1e-07 57.8 31 90.3
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 5.1e-07 57.8 31 87.1
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 5.1e-07 57.8 31 83.9
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 5.1e-07 57.8 31 87.1
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 5.1e-07 57.8 102 43.1
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 5.1e-07 57.8 115 39.1
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 8.8e-07 57.0 88 47.7
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 8.8e-07 57.0 31 83.9
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 1.5e-06 56.2 89 64.0
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 2.6e-06 55.5 78 43.6
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 3.3e-06 55.1 102 40.2
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 3.3e-06 55.1 83 42.2
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 4.4e-06 54.7 84 45.2
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 4.4e-06 54.7 30 86.7
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 4.4e-06 54.7 29 86.2
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 5.7e-06 54.3 30 86.7
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 7.4e-06 53.9 108 39.8


User provided reference genes

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