Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 5.3e-145 517.7 264 100.0
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 1.7e-114 416.4 268 79.9
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 6.1e-109 397.9 268 78.7
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 7.2e-102 374.4 267 73.8
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 9.4e-102 374.0 249 75.9
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.6e-101 373.2 267 73.8
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 7.2e-94 347.8 269 67.3
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 3.6e-93 345.5 268 67.9
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 2.6e-91 339.3 266 66.5
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 5.7e-91 338.2 272 66.2
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 4.8e-90 335.1 268 66.8
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.4e-89 333.6 265 66.8
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 3.8e-87 325.5 241 69.3
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 5.0e-87 325.1 266 65.0
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 8.5e-87 324.3 266 63.9
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.1e-86 323.9 268 66.0
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 2.5e-86 322.8 251 68.5
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.5e-86 322.8 268 63.1
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 6.1e-85 318.2 247 69.2
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 4.0e-84 315.5 251 67.7
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 4.0e-84 315.5 257 63.0
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 5.2e-84 315.1 244 65.6
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 6.8e-84 314.7 258 62.4
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.2e-83 313.9 243 65.8
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.7e-82 310.1 244 64.3
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 2.8e-82 309.3 268 61.2
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.8e-82 309.3 244 66.8
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 3.7e-82 308.9 254 64.6
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 3.7e-82 308.9 254 64.6
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.7e-82 308.9 209 77.0
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 3.7e-82 308.9 246 64.6
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 6.3e-82 308.1 268 61.2
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.3e-82 307.8 244 66.8
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 8.3e-82 307.8 261 62.8
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.4e-81 307.0 252 61.5
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 1.8e-81 306.6 257 63.0
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.8e-81 306.6 263 61.6
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 3.1e-81 305.8 249 65.1
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 3.1e-81 305.8 248 66.1
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 3.1e-81 305.8 246 66.3
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 5.4e-81 305.1 245 64.5
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 5.4e-81 305.1 245 64.5
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 5.4e-81 305.1 261 62.8
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 5.4e-81 305.1 260 61.9
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 1.2e-80 303.9 255 61.6
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.2e-80 303.9 247 66.0
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.0e-80 303.1 247 66.0
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 4.5e-80 302.0 250 64.8
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 5.9e-80 301.6 256 60.5
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 5.9e-80 301.6 251 61.4
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.3e-79 300.4 250 61.6
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.7e-79 300.1 256 60.2
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.7e-79 300.1 256 60.2
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 3.8e-79 298.9 242 65.3
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 3.8e-79 298.9 261 61.7
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 5.0e-79 298.5 268 60.1
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 8.6e-79 297.7 261 61.3
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.1e-78 297.4 256 62.9
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 2.5e-78 296.2 249 59.4
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 2.5e-78 296.2 244 64.3
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 4.3e-78 295.4 257 61.1
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 8.0e-77 291.2 248 64.1
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.0e-76 290.8 255 62.0
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.0e-76 290.8 249 59.4
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 1.8e-76 290.0 259 59.8
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.8e-76 290.0 249 61.8
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.8e-76 290.0 253 58.5
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.2e-75 287.3 249 61.4
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 3.4e-75 285.8 234 62.8
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 5.7e-75 285.0 257 58.4
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 2.9e-74 282.7 244 60.7
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 2.9e-74 282.7 238 61.8
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 2.4e-73 279.6 242 60.3
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.4e-73 279.6 238 60.9
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 4.1e-73 278.9 246 61.0
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 5.4e-73 278.5 242 60.7
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 5.4e-73 278.5 242 60.7
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 2.0e-72 276.6 236 61.4
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 2.0e-72 276.6 248 56.5
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.7e-72 276.2 271 57.9
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 2.7e-72 276.2 250 60.8
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 3.5e-72 275.8 238 60.9
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 3.5e-72 275.8 238 60.9
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 3.5e-72 275.8 238 60.9
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.5e-72 275.8 215 69.8
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.0e-71 274.2 238 60.5
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.0e-71 274.2 238 60.1
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.0e-71 274.2 249 57.0
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 3.9e-71 272.3 250 58.0
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 3.9e-71 272.3 246 57.7
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 6.6e-71 271.6 239 59.0
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 6.6e-71 271.6 246 58.5
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 8.6e-71 271.2 265 57.0
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.1e-70 270.8 244 58.2
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 3.3e-70 269.2 247 60.7
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 4.3e-70 268.9 229 60.3
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 9.5e-70 267.7 227 60.4
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 1.6e-69 266.9 239 59.4
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 2.8e-69 266.2 238 59.7
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 4.7e-69 265.4 238 59.7
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.2e-67 260.8 238 59.7
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.4e-67 259.2 255 54.5
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 4.4e-67 258.8 260 54.6
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 4.4e-67 258.8 251 55.4
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 1.3e-66 257.3 259 54.4
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 2.9e-66 256.1 242 58.7
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 9.2e-65 251.1 268 53.0
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.7e-64 249.6 250 53.2
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 2.3e-63 246.5 246 57.7
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 4.0e-60 235.7 241 54.4
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 8.9e-60 234.6 228 53.5
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 7.5e-59 231.5 178 67.4
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 9.8e-59 231.1 249 52.2
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.9e-57 226.9 243 55.6
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 4.3e-54 215.7 237 53.6
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 4.3e-54 215.7 225 54.7
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 9.9e-51 204.5 228 53.5
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 6.4e-50 201.8 233 47.6
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.1e-46 191.0 154 61.7
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 9.6e-46 188.0 238 47.1
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 8.1e-45 184.9 218 45.9
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.8e-37 159.1 231 38.1
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.4e-36 156.8 235 38.3
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.9e-36 155.2 249 41.8
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 9.0e-36 154.8 261 41.4
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.0e-35 153.7 140 51.4
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 2.6e-35 153.3 136 58.8
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 5.8e-35 152.1 112 61.6
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 5.8e-35 152.1 209 41.1
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.9e-34 149.8 181 45.3
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.4e-34 148.7 150 51.3
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.9e-33 147.1 231 36.4
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 3.2e-33 146.4 236 38.1
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 1.0e-31 141.4 242 38.8
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 4.3e-30 136.0 217 38.2
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 9.9e-27 124.8 160 49.4
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 5.7e-14 82.4 81 50.6
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 6.3e-13 79.0 192 29.7
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.0e-11 73.9 78 55.1
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 1.1e-09 68.2 70 57.1
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 1.1e-09 68.2 70 57.1
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 1.8e-07 60.8 81 46.9
Carub.0002s0414 Capsella rubella HOM05D001019 ORTHO05D000859 3.3e-06 56.6 180 30.6
AT1G61065 Arabidopsis thaliana HOM05D001019 ORTHO05D000859 9.7e-06 55.1 180 30.0


User provided reference genes

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