Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G112400 Prunus persica HOM05D005592 ORTHO05D006067 3.9e-72 274.6 131 100.0
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 6.0e-49 197.6 185 61.6
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 6.4e-35 151.0 182 51.1
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 3.3e-31 138.7 163 50.9
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 3.1e-29 132.1 163 48.5
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 6.9e-29 131.0 160 47.5
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 2.6e-28 129.0 161 47.8
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 1.3e-27 126.7 169 43.8
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 1.8e-24 116.3 176 43.2
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 6.7e-24 114.4 151 43.7
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 1.1e-23 113.6 188 41.0
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 1.5e-23 113.2 175 42.9
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 1.5e-23 113.2 177 43.5
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 4.3e-23 111.7 174 43.1
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 4.3e-23 111.7 174 43.1
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 9.6e-23 110.5 172 42.4
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 1.3e-22 110.2 170 42.4
Prupe.1G112300 Prunus persica HOM05D005592 ORTHO05D006067 1.3e-22 110.2 54 96.3
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 1.6e-22 109.8 177 39.5
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 2.8e-22 109.0 156 44.2
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 3.7e-22 108.6 167 41.3
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 3.7e-22 108.6 171 40.4
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 4.8e-22 108.2 153 45.1
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 4.8e-22 108.2 184 39.1
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 4.8e-22 108.2 171 40.4
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 6.2e-22 107.8 172 41.9
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 1.1e-21 107.1 172 41.9
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 1.8e-21 106.3 162 40.1
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 5.3e-21 104.8 139 46.0
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 6.9e-21 104.4 172 41.9
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 9.0e-21 104.0 172 41.3
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 1.2e-20 103.6 172 41.9
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 2.0e-20 102.8 153 43.8
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 2.9e-19 99.0 179 38.0
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 4.9e-19 98.2 159 39.6
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 4.9e-19 98.2 157 40.8
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 6.5e-19 97.8 167 36.5
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 1.1e-18 97.1 165 37.0
Glyma.04G225100 Glycine max HOM05D005592 ORTHO05D006067 1.4e-18 96.7 153 42.5
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 1.4e-18 96.7 176 37.5
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 3.2e-18 95.5 169 37.3
Eucgr.H00237 Eucalyptus grandis HOM05D005592 ORTHO05D006067 4.2e-18 95.1 174 38.5
VMungo1309G2865 Vigna mungo HOM05D005592 ORTHO05D006067 4.2e-18 95.1 154 41.6
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 5.5e-18 94.7 159 37.7
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 7.1e-18 94.4 151 41.1
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 4.6e-17 91.7 191 35.1
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 6.0e-17 91.3 163 37.4
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 1.3e-16 90.1 167 38.3
MELO3C002725.2 Cucumis melo HOM05D005592 ORTHO05D006067 1.8e-16 89.7 163 36.8
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 1.8e-16 89.7 75 56.0
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 2.3e-16 89.4 140 40.7
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 3.0e-16 89.0 173 34.1
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 3.9e-16 88.6 75 56.0
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 5.1e-16 88.2 58 75.9
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 8.7e-16 87.4 168 35.7
AL1G47780 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 1.5e-15 86.7 167 34.7
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 2.5e-15 85.9 174 34.5
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 2.5e-15 85.9 181 35.4
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 2.5e-15 85.9 169 35.5
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 4.3e-15 85.1 167 35.9
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 5.7e-15 84.7 178 32.6
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 7.4e-15 84.3 163 33.7
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 1.6e-14 83.2 172 34.9
Thhalv10006832m.g Eutrema salsugineum HOM05D005592 ORTHO05D006067 2.1e-14 82.8 151 36.4
ATR1126G052 Amborella trichopoda HOM05D005592 ORTHO05D006067 3.7e-14 82.0 167 34.7
AT1G33400 Arabidopsis thaliana HOM05D005592 ORTHO05D006067 4.8e-14 81.6 150 35.3
vmacro06869 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 4.8e-14 81.6 176 34.1
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 8.2e-14 80.9 156 35.3
CDE04G0667 Ceratophyllum demersum HOM05D005592 ORTHO05D006067 2.4e-13 79.3 72 56.9
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 3.1e-13 79.0 74 59.5
Aa31LG6G7910 Aethionema arabicum HOM05D005592 ORTHO05D006067 4.1e-13 78.6 148 35.8
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 4.1e-13 78.6 72 55.6
CARHR032830 Cardamine hirsuta HOM05D005592 ORTHO05D006067 5.3e-13 78.2 162 34.0
Carub.0001s3159 Capsella rubella HOM05D005592 ORTHO05D006067 2.0e-12 76.3 150 33.3
THA.LOC104813079 Tarenaya hassleriana HOM05D005592 ORTHO05D006067 2.0e-12 76.3 152 35.5
A05p24340 Brassica napus HOM05D005592 ORTHO05D006067 2.6e-12 75.9 150 34.0
BraA05t21327Z Brassica rapa HOM05D005592 ORTHO05D006067 2.6e-12 75.9 150 34.0
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 3.4e-12 75.5 75 49.3
CSS0024281 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 5.9e-12 74.7 62 62.9
BcaC05g27807 Brassica carinata HOM05D005592 ORTHO05D006067 7.6e-12 74.3 150 33.3
C05p38090 Brassica napus HOM05D005592 ORTHO05D006067 7.6e-12 74.3 150 33.3
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 7.6e-12 74.3 72 54.2
Os10g0506800 Oryza sativa ssp. japonica HOM05D005592 ORTHO05D006067 7.6e-12 74.3 167 30.5
BolC5t32537H Brassica oleracea HOM05D005592 ORTHO05D006067 1.0e-11 73.9 150 33.3
Sp1g28850 Schrenkiella parvula HOM05D005592 ORTHO05D006067 1.0e-11 73.9 150 33.3
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 1.7e-11 73.2 75 50.7
HPP92_022562 Vanilla planifolia HOM05D005592 ORTHO05D006067 1.7e-11 73.2 163 32.5
BcaB03g13702 Brassica carinata HOM05D005592 ORTHO05D006067 2.2e-11 72.8 156 32.1
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 1.1e-10 70.5 115 40.9
Zm00001eb044040 Zea mays HOM05D005592 ORTHO05D006067 1.9e-10 69.7 63 54.0
Cpa.g.sc41.42 Carica papaya HOM05D005592 ORTHO05D006067 5.5e-10 68.2 50 70.0
Actinidia27253 Actinidia chinensis HOM05D005592 ORTHO05D006067 4.6e-09 65.1 68 57.4
AL8G14960 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 4.6e-09 65.1 67 50.7
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 1.8e-08 63.2 117 35.0
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 8.7e-08 60.8 65 47.7
Haze_17388 Corylus avellana HOM05D005592 ORTHO05D006067 4.3e-07 58.5 41 65.9
AL8G14970 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 6.3e-06 54.7 56 51.8


User provided reference genes

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