Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 2083.1 1099 100.0
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1827.8 1096 87.3
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1637.1 1097 78.8
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1627.5 1099 77.5
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1614.7 1099 77.3
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1610.1 1115 76.5
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1530.8 1099 71.6
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1489.2 1146 70.9
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1482.2 1100 70.2
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1433.7 1093 70.0
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1430.6 1095 68.8
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1426.4 1095 68.9
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1423.7 1089 68.9
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1411.4 1096 69.8
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1392.1 1093 67.2
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1387.5 1093 68.0
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1387.5 1096 66.6
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1376.3 1093 68.4
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1375.1 1093 68.0
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1367.8 1102 65.9
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1365.5 1095 67.2
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1365.1 1095 67.4
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1363.6 974 71.3
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1355.9 1100 66.0
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1354.3 1102 66.4
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1354.3 1099 65.8
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1351.3 1093 67.2
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1339.7 1095 65.8
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1338.9 1105 65.9
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1333.9 1099 65.2
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1333.9 1102 65.1
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1333.5 1096 65.3
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1330.5 1106 64.5
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1327.4 1091 65.2
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1323.9 1101 64.3
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1322.8 1054 67.8
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1315.1 1104 65.2
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1311.2 1098 63.3
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1309.3 1078 64.7
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1302.3 1094 64.5
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1293.1 1058 66.1
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1283.9 1106 65.0
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1274.2 1094 63.7
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1270.0 1077 62.1
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1247.3 1090 60.7
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1240.3 1200 56.9
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1236.5 1092 61.4
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1227.2 1093 61.1
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1223.8 1093 60.8
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1216.4 1098 62.4
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1214.9 1092 61.3
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1205.7 1091 60.2
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1204.1 1096 60.3
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1199.9 1116 61.5
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1183.3 1077 61.3
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1182.9 1102 59.3
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1170.2 1110 58.4
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 0.0e+00 1164.1 1116 58.9
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1159.8 1096 57.8
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1158.7 1096 57.8
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 0.0e+00 1156.7 1093 60.3
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 0.0e+00 1155.6 1009 59.5
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1153.3 1090 58.9
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1145.2 1101 58.4
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 0.0e+00 1142.1 1094 57.8
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1137.5 1096 57.4
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1136.3 1104 57.9
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1130.2 1131 57.1
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1120.5 1073 58.6
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1119.0 1097 56.6
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 0.0e+00 1111.7 1169 55.0
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 0.0e+00 1107.4 1096 57.0
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1100.1 1100 56.9
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 0.0e+00 1097.8 1100 56.8
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 0.0e+00 1084.3 1094 56.0
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 0.0e+00 1083.2 1040 58.6
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 5.3e-308 1061.2 1095 52.4
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 3.2e-305 1052.0 1095 52.2
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 2.8e-293 1012.3 1097 52.2
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 1.0e-290 1003.8 1100 50.5
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 5.7e-286 988.0 1108 53.2
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.4e-284 982.6 1113 53.8
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 6.0e-243 845.1 500 83.8
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 7.1e-236 821.6 1112 45.1
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.5e-235 819.3 596 70.8
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.3e-229 800.8 1113 42.7
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.3e-229 800.8 1113 42.7
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 2.7e-227 793.1 649 62.4
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 2.0e-222 776.9 722 58.6
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.5e-209 733.4 1145 41.0
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 6.1e-195 685.6 634 60.1
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 1.9e-188 664.1 1009 38.3
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.7e-179 633.6 1070 34.9
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 5.2e-162 576.2 432 68.5
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.1e-142 511.1 430 61.6
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 3.9e-117 427.2 441 56.2
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 4.0e-114 417.2 466 47.9
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 4.0e-106 390.6 825 31.0
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 2.2e-96 358.2 336 60.7
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.2e-94 352.4 447 51.7
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.6e-89 334.7 372 50.8
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 3.0e-85 321.2 229 66.8
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 6.9e-82 310.1 287 54.7
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 5.0e-80 303.9 406 47.3
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.4e-79 299.7 460 37.8
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 5.7e-68 263.8 948 26.9
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 6.1e-62 243.8 717 27.5
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 5.7e-60 237.3 657 29.7
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 5.7e-44 184.1 158 58.9
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 1.1e-39 169.9 252 44.4
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.8e-36 157.5 87 85.1
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.9e-32 144.8 138 57.2
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 1.5e-31 142.9 189 48.7
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 2.5e-31 142.1 164 47.0
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.2e-30 139.8 90 74.4
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 6.2e-30 137.5 162 63.6
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.8e-29 136.0 122 51.6
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 8.9e-29 133.7 115 53.0
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.2e-26 125.2 102 59.8
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 3.5e-25 121.7 105 52.4
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 4.6e-25 121.3 140 51.4
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 6.6e-24 117.5 112 56.2
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 4.3e-23 114.8 217 51.2
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.1e-21 108.6 102 54.9
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 8.9e-21 107.1 89 52.8
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 1.5e-20 106.3 114 48.2
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 2.6e-20 105.5 182 52.2
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.9e-18 99.4 134 46.3
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 3.2e-18 98.6 129 45.0
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 6.6e-16 90.9 85 54.1
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 6.6e-16 90.9 85 54.1
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 2.5e-15 89.0 129 41.9
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 9.6e-15 87.0 65 58.5
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 2.1e-14 85.9 643 21.3
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 6.2e-14 84.3 662 22.1
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.8e-13 82.8 658 21.7
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 2.6e-12 79.0 659 20.9
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 3.8e-11 75.1 51 68.6
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 8.4e-11 73.9 663 20.8
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 9.3e-10 70.5 654 20.6
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 6.0e-09 67.8 519 20.6
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 1.7e-08 66.2 42 71.4
CDE09G0536 Ceratophyllum demersum HOM05D005298 ORTHO05D043882 1.1e-07 63.5 88 43.2
Actinidia31594 Actinidia chinensis HOM05D005298 ORTHO05D026321 2.5e-07 62.4 109 40.4
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 5.6e-07 61.2 52 55.8


User provided reference genes

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