Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 1.2e-92 343.2 174 100.0
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 3.8e-83 311.6 174 89.1
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 4.9e-83 311.2 174 89.7
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 8.4e-83 310.5 174 89.1
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.9e-82 309.3 174 89.7
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 2.4e-82 308.9 174 88.5
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.4e-82 308.9 174 88.5
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.1e-81 305.8 174 87.9
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.8e-80 302.8 174 87.4
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 3.1e-77 292.0 174 82.8
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 4.5e-76 288.1 174 81.6
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 4.5e-76 288.1 174 78.7
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 7.6e-76 287.3 174 81.0
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 7.6e-76 287.3 174 81.6
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.0e-75 287.0 174 81.6
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.7e-75 286.2 174 81.0
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.7e-75 286.2 174 81.0
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 2.2e-75 285.8 174 80.5
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 80.5
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 3.8e-75 285.0 174 79.9
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 4.9e-75 284.6 174 80.5
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 8.4e-75 283.9 174 80.5
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 81.0
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 3.2e-74 282.0 174 79.3
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 9.3e-74 280.4 174 78.7
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 1.6e-73 279.6 174 79.9
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 78.2
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 78.2
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 1.3e-72 276.6 174 77.6
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.8e-72 276.2 174 78.2
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.0e-72 275.4 174 77.6
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 5.1e-72 274.6 194 71.1
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 6.7e-72 274.2 174 77.0
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 6.7e-72 274.2 174 78.7
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 1.5e-71 273.1 174 75.3
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.9e-71 272.7 174 77.6
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.9e-71 272.7 174 75.3
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 7.4e-71 270.8 174 76.4
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 74.7
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 74.7
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 74.7
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 74.7
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 75.3
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 75.9
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 77.6
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.9
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 3.7e-70 268.5 175 77.1
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 74.7
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 75.9
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 75.9
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 74.7
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 8.2e-70 267.3 174 75.3
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 73.6
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 73.6
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.7
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 6.9e-69 264.2 175 74.3
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 9.0e-69 263.8 198 69.7
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.0e-68 262.7 174 74.7
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.6e-68 262.3 174 74.1
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 7.6e-68 260.8 174 73.0
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.6
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 71.8
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 73.6
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 74.1
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 72.4
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 70.7
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 1.1e-66 256.9 173 70.5
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 3.2e-66 255.4 174 73.0
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 73.0
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 7.2e-66 254.2 171 73.7
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 71.3
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 73.0
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 2.1e-65 252.7 171 71.9
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 71.8
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 72.4
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 70.7
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.8e-64 249.6 174 70.1
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.8e-64 249.6 158 77.2
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 70.7
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 5.1e-64 248.1 166 71.1
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.9e-63 246.1 166 70.5
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 69.0
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 70.7
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 70.1
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.5e-60 236.5 174 70.7
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 2.0e-60 236.1 173 68.2
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 66.1
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.3e-59 233.4 171 68.4
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 2.2e-59 232.6 143 75.5
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.1e-58 230.3 174 67.2
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 1.9e-58 229.6 174 66.7
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.9e-58 229.6 156 70.5
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 3.2e-58 228.8 146 77.4
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 7.2e-58 227.6 174 67.8
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 9.4e-58 227.3 174 65.5
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 2.7e-57 225.7 174 66.7
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 4.7e-57 224.9 151 68.9
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 66.7
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 66.7
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 66.7
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 7.9e-57 224.2 175 65.1
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 3.0e-56 222.2 147 74.1
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 9.7e-55 217.2 174 63.8
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 2.2e-54 216.1 174 63.2
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.8e-54 215.7 174 60.9
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 3.1e-53 212.2 176 63.6
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 4.1e-53 211.8 174 61.5
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 1.2e-52 210.3 174 61.5
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.0e-52 209.5 174 60.9
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 1.3e-51 206.8 122 78.7
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 5.5e-50 201.4 172 59.9
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 7.2e-50 201.1 174 59.2
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 7.2e-50 201.1 172 59.9
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.1e-49 199.5 196 54.6
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 8.0e-49 197.6 122 73.0
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 4.8e-46 188.3 122 73.0
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 2.4e-45 186.0 171 55.0
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.2e-44 183.7 239 44.8
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 4.5e-44 181.8 182 54.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.3e-43 180.3 175 52.6
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 6.7e-40 167.9 177 51.4
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.2e-39 167.2 174 48.9
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 7.5e-39 164.5 173 52.6
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 2.8e-38 162.5 95 80.0
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 6.3e-38 161.4 173 45.7
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.0e-35 154.1 94 73.4
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.7e-35 153.3 94 73.4
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 8.5e-35 151.0 93 75.3
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 2.0e-28 129.8 127 58.3
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 4.0e-24 115.5 119 51.3
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.5e-23 113.6 96 52.1
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 1.8e-21 106.7 67 73.1
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 7.8e-20 101.3 121 49.6
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 2.3e-19 99.8 85 58.8
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 2.9e-19 99.4 168 35.7
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.6e-19 98.2 55 76.4
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.3e-18 95.9 53 79.2
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.1e-17 91.7 48 83.3
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 4.0e-16 89.0 176 29.5
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.6e-12 77.0 173 31.2
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.5e-12 75.9 38 84.2
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 9.5e-10 67.8 93 41.9
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.2e-07 60.8 172 31.4


User provided reference genes

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